1SIG


Conserved Protein Domain Family
Sigma70_ner

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pfam04546: Sigma70_ner 
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Sigma-70, non-essential region
The domain is found in the primary vegetative sigma factor. The function of this domain is unclear and can be removed without loss of function.
Statistics
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PSSM-Id: 377381
View PSSM: pfam04546
Aligned: 216 rows
Threshold Bit Score: 56.3897
Threshold Setting Gi: 316945454
Created: 5-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1SIG_A                       29 PEAITYLLEQYNRVEAEearlsdlitgfvdpnaeedlapta-------------------------------------th 71  ...
Q1GUH6                      154 pltfnaiieWSNALNNGdmqlreivdleamlskdpapenldeegaedgeisektag-------vsfkdedeveeepaadg 226 ...
CCA90663                    166 pltfhaiigWSEALNNGdmqlreildldamlskepqpenlgedgeadgeisaata---------gptfkedddsvednse 236 ...
ELS:G432_00655              187 ldamlskgptaEQVESAededgeiseqstgpsfkeedepeea-----------------------------------sad 231 ...
jgi:Swit_0431               161 pitfnaiieWSNALNEGtmqlreildldamlskgptaeqvenedadaeisaetag---------ptfkeeeepeeeasad 231 ...
dbos:SAR116_2233            153 PLTIRALMHWRDQIADGvvplrdiidlesthtklnggpitdqnvinamndeisdedleddeeeleeeelddddeededde 232 ...
ProjectID_NA219340:P856_737 155 PLTIRALVQWRDQLKDGtillrdvidleatygvehatltpysden----------------------------nkknetk 206 ...
jgi:Selin_0173              162 PKAVESLQELAEKLEAGeiglkdiimlddevgsmgiig------------------------------------------ 199 ...
Q2INW6                      309 siAIREILELGERLRKGkirvreiikdagdeqqaeqeepeeel---------------------------------deav 355 ...
MPITM:COCOR_02304           237 rVAVADILDISNRLKTGklrvrdvikdapeeaq----------------------------------------------- 269 ...
1SIG_A                       72 vgselsqedldddededeedgDDDSADDDNSIDPELAREKFAELRAQYVVTRD------------TIKAK-GR-SHATAQ 137 ...
Q1GUH6                      227 ddedgegtsgkresfddddednTLSLAAMEELLKPDALEKFANITKSFKAFQKlqear---lealSSGEEfPAaSEKKYH 303 ...
CCA90663                    237 evdedgnpipkrrgeedeeddnILSLGQMEAALKPEALAKFALITELFRTFERlqser---ldalALGIDfPGaKEDQYQ 313 ...
ELS:G432_00655              232 ddedsmterrtprptedddddnTLSLAQMEEQLKPMALEKFATITELYKKFHKmqvar---leamGAGGElPAaEEKKYQ 308 ...
jgi:Swit_0431               232 ededsmterraprpqedddednTLSLAQMEEQLKPMALERFAAITDLYKTFSQvqsar---vaalGVGDDfPAaEEERYQ 308 ...
dbos:SAR116_2233            233 sgdsdtdtstrdshddedsedINMSLAAMEDAVRDDVMAMFDEIATVFKAFTKsqdrr---lvrmSKGEAlVPkSEVAHL 309 ...
ProjectID_NA219340:P856_737 207 sekakrldnkendeypddseeNNISLSVMEQQLIPQVLKKFDNIANTYSKLAKmqkrr---idklTRGEElAKtPERKYE 283 ...
jgi:Selin_0173              200 -nstsydedeesaeedaedpsSAHVRAENATEMRDFVINSICDIGQQLLSLRE------------YKAKG----KKDKYR 262 ...
Q2INW6                      356 eaaegqgeaeaeagaegdgaaAAEGAEPEKPRIPKEEERKVEHVLKHIDRIRKlerdvakvretlQGGKKlSEvKRKELK 435 ...
MPITM:COCOR_02304           270 -------------senaeepaeeaaegeaPAQLAQSELNKIEQISKQIERFRKfakdcevleeelSGKKKlTEvRKKELK 336 ...
1SIG_A                      138 EEILKL----SEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLcVEQCKMPKKNFITLFTGNETSDTWFNAAIAM 213 ...
Q1GUH6                      304 KLREEL----TAQVESVQFHGTKIEYLVDQLYSYNRRLTALGGQMLRL-AERHKVPRKSFLDHYVGRELEENWLEEVAGI 378 ...
CCA90663                    314 QLREDL----TAQVESVQFHATKIETLVDNLYAFNRRLTTLGGQMLRL-AERHKVKRADFLDAYTGRELDDAWLTEMAST 388 ...
ELS:G432_00655              309 SLREDL----TAEVESVQFHGAKIEYLVDQLYSFNRRLMALGGQMLRL-AERHKVQRKSFLDAYVGHETEEGWLDRVAGL 383 ...
jgi:Swit_0431               309 GLREQL----TAEVESVQFHGAKIEYLVDQLYSFNRRLTTLGGQMLRL-AERHKVPRRDFLEAYVNHEMEDGWLDRVGRI 383 ...
dbos:SAR116_2233            310 ELKIKL----CELMEGVIFNTGRIEALSEQLFTLNRHVTGIEGRLMRL-AIDSGIPRAQVLEAWSWREVIEGWPGSDFS- 383 ...
ProjectID_NA219340:P856_737 284 KLKRDL----IEAMESVRLNNSRIDSIVEQLYSLNRNMIQVDTQLWRM-ADSVNVSRKSFMEEHFGNELEPGWAKRVAKK 358 ...
jgi:Selin_0173              263 KTLESM----TAVISEIRLTNETISRISNMIKEQYLESRRAGSELAKI-IKVTGLSRDD-LQYLCGEESSAEHVESARAK 336 ...
Q2INW6                      436 GEVRAIeaemMENLEAIQLNKKQIDRIVLRLKSFIKRVEEAEREFFDC-ERRTGVPVKDLRRLLRETREDEAERKKLAKK 514 ...
MPITM:COCOR_02304           337 QEVKDLrtkmMEVLEEMRLNKKQVDRIVLNLKGLIERVEKAEEELGDL-ERRYQVNMKDLRPQLKESRENPNIAKKLQKQ 415 ...
1SIG_A                      214 NKPWSEKLHDVSEEVHRALQKLQQI 238 Escherichia coli K-12
Q1GUH6                      379 DKKWAAFAENEAAAVDRIRVEISEI 403 Sphingopyxis alaskensis
CCA90663                    389 DKKWASFAESEAEPAERIRLEVSDI 413 Novosphingobium sp. PP1Y
ELS:G432_00655              384 DKKWAAFAAAEAAPVERIRAEIAEI 408 Sphingomonas sp. MM-1
jgi:Swit_0431               384 DKKWANFAANEADAVDRIRNEIGEI 408 Sphingomonas wittichii RW1
dbos:SAR116_2233            384 TKAWQKLDKNHSEEITELQDKIRlv 408 Candidatus Puniceispirillum marinum IMCC1322
ProjectID_NA219340:P856_737 359 GESWRKFFKTYSDQIEKHRSNLAKI 383 Candidatus Endolissoclinum faulkneri L5
jgi:Selin_0173              337 TSLRAEDFERLLGKASESIASLREI 361 Desulfurispirillum indicum S5
Q2INW6                      515 LRCALDEVEELDRTLRSAGRKILRV 539 Anaeromyxobacter dehalogenans 2CP-C
MPITM:COCOR_02304           416 LNFTPEQLEVLDRDVRTAVRKIKRV 440 Corallococcus coralloides DSM 2259
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