2COM


Conserved Protein Domain Family
SWIRM

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pfam04433: SWIRM 
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SWIRM domain
This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA.
Statistics
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PSSM-Id: 335787
View PSSM: pfam04433
Aligned: 253 rows
Threshold Bit Score: 37.5257
Threshold Setting Gi: 74698335
Created: 22-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2COM_A        25 DRMTSQEAACFPDIIsgpqQTQKVFLFIRNRTLQLWLDN------P---KIQLTFEATlqqleapynS-DTVLVHRVHSY 94  human
XP_004350198 593 NALSIKEKQLCSSIR----ILPRQYLLIKETILAESTKLskqqppPtkqPL-IKLSNIskl-----ielDQSKISKILEF 662 Dictyostelium f...
XP_001646770 385 GLLSPDEQQLCVQLK----ILPKPYLAIKEVIFRELLKN----------GGNLKKKSCrel-----lniEAAKANRIYDF 445 Vanderwaltozyma...
XP_003687607 370 NLLSENEQHLCAQLK----ILPKPYLAIKEVIFRELLKN----------NGMLKRKNCrdl-----lniEAVKANRIYDF 430 Tetrapisispora ...
XP_003959036 367 GLLSASEQQLCIHLK----ILPKPYIAIKELMFRELIRM----------KGMMKRKDCrdl-----lniDATKANKIYSF 427 Kazachstania af...
XP_003671597 372 GLLSVDEQQLCIQLK----ILPKPYFAIKDLMFRELIRT----------RGHMQRKDCiql-----lkiDPIKANKVYDF 432 Naumovozyma dai...
XP_007846660 489 HLLTPGEQTLCSQLR----ILPKPYLVIKETLVREYARR----------GGKLRRREArdl-----vkvDVSKTARVWDF 549 Moniliophthora ...
XP_011388252 586 NLLTPAEAQLCSALR----ILPQPFLLIKSTLIAEFIAR----------GGRLTRRECrtl-----vkiDVNKLGKVWDF 646 Ustilago maydis...
XP_006959207 433 YLLNEDEQKLCQSVK----MLPKPYMVIKEALSREYYKR----------LGQLKVEDAskl----isSiEENKIREIYSF 494 Wallemia sebi C...
XP_009269693 436 YLLNHEEQKLCQTLK----ILPKPYLVIKEAISREYHKR----------SGRLTKEDAtkl----inDvENSKIEDIYRF 497 Wallemia ichthy...
2COM_A        95 LERHGLINF 103 human
XP_004350198 663 FEQCRWINQ 671 Dictyostelium fasciculatum
XP_001646770 446 FQTQNWI-- 452 Vanderwaltozyma polyspora DSM 70294
XP_003687607 431 FLAQNWI-- 437 Tetrapisispora phaffii CBS 4417
XP_003959036 428 FQSQNWI-- 434 Kazachstania africana CBS 2517
XP_003671597 433 FQSQHWI-- 439 Naumovozyma dairenensis CBS 421
XP_007846660 550 LVQAGFLKI 558 Moniliophthora roreri MCA 2997
XP_011388252 647 FNEMGYFDA 655 Ustilago maydis 521
XP_006959207 495 LLKNGYLNS 503 Wallemia sebi CBS 633.66
XP_009269693 498 LLKIGFLNV 506 Wallemia ichthyophaga EXF-994
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