5GJK,2COM


Conserved Protein Domain Family
SWIRM

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pfam04433: SWIRM 
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SWIRM domain
This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA.
Statistics
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Aligned: 247 rows
Threshold Bit Score: 41.3933
Threshold Setting Gi: 74698335
Created: 5-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5GJK_A               12 FDY--NCIHVIERRALPEFFngknksKTPEIYLAYRNFMIDTYRLNP---QEYLTSTACrrnltgDVCAVMRVHAFLEQW 86  human
EME47931            332 NDPnrEHLHVQELEVAAVLR------LPCNKYLANKRRVFNERLKSLregRD-FNKTSAqnvtkiDVNKASRMWQAFDNI 404 Dothistr...
EGP90069            447 NDPdrLHLHPQELKVASKLR------LHGNEYLLNKRRIFAAKLKSLqegTA-FNKTSAqnatsvDVNKASRLWSAFDSV 519 Zymosept...
EGX47412            289 NDPdrHLLHKAEQHLASTLK------LSCGQYLTQKRLIFLERVTRLragNQVFSRTHAqqvchiDVNKASRLFAAFEKV 362 Arthrobo...
WGS:AFWA:PNEG_03533 211 NDPhvDQLHPAEVYLASQLR------LPAMVYLDNKRRIFAEYHARKeagLG-FRRTDAqrcariDVNKASRLWQAFERV 283 Pneumocy...
EPY49980            208 NDPhyHLLHPAEVHLASTLR------LPCMVYLDNKRRIFAEWHYRKqqgLG-FRKTDAqrasrvDVNKASRLWKAFHEE 280 Schizosa...
ESW95924            294 EDPlvEELHPAEVQLASTLR------LPPNVYLDSKRRIFFEKVKRLranLP-FRRTDAqkackiDVNKASRLYAAFEKI 366 Ogataea ...
Q6BX61              263 NDPnaDKIHPAEVLLASTLR------LPCNVYLDSKRRLFYEKVNRMksgMQ-FRRTDAqkacriDVNKASRLFAAFEKV 335 Debaryom...
CCC70559            288 NDPlvDKLHPAEVQLAQILR------LPCDLYLDSKRRLFLEKVYRLklgLP-FRRTDAqkacriDVNKASRLFAAFEKV 360 Naumovoz...
XP_011271827        276 DDPllDKLHPAEATLASILR------LPCNLFLDSKRRLFAEKVTRMkkgLP-FRRTDAqkscriDVNKASRLFAAFEKI 348 Wickerha...
5GJK_A               87 GLVNY 91  human
EME47931            405 GWFDE 409 Dothistroma septosporum NZE10
EGP90069            520 GWFDE 524 Zymoseptoria tritici IPO323
EGX47412            363 GWLSP 367 Arthrobotrys oligospora ATCC 24927
WGS:AFWA:PNEG_03533 284 GWLD- 287 Pneumocystis murina B123
EPY49980            281 GFFDD 285 Schizosaccharomyces cryophilus OY26
ESW95924            367 GWLDD 371 Ogataea parapolymorpha DL-1
Q6BX61              336 GWLND 340 Debaryomyces hansenii
CCC70559            361 GWLKD 365 Naumovozyma castellii CBS 4309
XP_011271827        349 GWLQD 353 Wickerhamomyces ciferrii
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