6O16,6FA5


Conserved Protein Domain Family
HA2

?
pfam04408: HA2 
Click on image for an interactive view with Cn3D
Helicase associated domain (HA2)
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Statistics
?
PSSM-Id: 367926
View PSSM: pfam04408
Aligned: 426 rows
Threshold Bit Score: 44.1428
Threshold Setting Gi: 299471295
Created: 11-Jun-2019
Updated: 18-Jul-2019
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
6O16_A        555 AEELLVALGAL------QAP-PKqermkklqmsqlscpITALGRTMSTFPVAPRYAKMLALSqqHGCLPYTIAIVAAMTv 627  house mouse
XP_003552808  658 AIRNLIQLGAIel---nNDV-HD---------------LTSEGWCLVRMGIEPRLGKLILGCfkHGLGREGIILAAVMAn 718  soybean
ERN17266      627 AIQNLIQLGAVif---rGDV-LE---------------LTDCGHQLVKLGIEPRLGKLILGCfsESLGREGLVLAAVMAn 687  Amborella tri...
P0CE10        694 AIQNLVQLGAVve---kNGV-LE---------------LTQEGHCLVKLGLEPKLGKLILGCfrHRMGKEGIVLAAVMAn 754  thale cress
XP_002307067  669 AIRNLVQLGAItl---kGGI-CE---------------LTEEGRYMVKMGIEPRLGKIIISSfhYRLGKEGLVLAAVMAn 729  black cottonwood
EEF39686      511 AIRNLVQLGAVtc---kNGT-FE---------------LTMDGHYLVKLGIEPRLGKIILDScrHGLRKEGVVLAAVMAn 571  castor bean
1_pfamImport    1 ALLELTSLGAIrptnadRNK-FA---------------LTEMGDAFCMYPLPPDHARVLYQAqrEGCIMEAIKIISAMQ- 63  
XP_006353197  633 ATRNLVQLGAVtq---rDDAsYE---------------LTAEGLKLVKLGIEPRLGKMILSCfdQRLGKEGVALAAVMAn 694  potato
RVW57564      327 AIRNLLQLGAVtl---tNDF-YD---------------LTEEGRCLVKLGIEPRLGKLILNCfhHRLGREGLVLAAVMAn 387  wine grape
XP_024444034  650 AIRNLVQLGAVaw---kHDA-FV---------------LTADGRYLVKLGMEPRLGKIILESlrYGLRKEGVVLAAAMAn 710  black cottonwood
6O16_A        628 -RELFEELDRPaasekelaelkgrRARVAQMKRTWAGQGpslK---LGDLMV 675  house mouse
XP_003552808  719 aSSIFCRVG----------------NEFDKQRSDCLKVQ---FchcDGDLFT 751  soybean
ERN17266      688 aNSIFCRVG----------------NDEEKTKSDCLKVK---FchrDGDLFT 720  Amborella trichopoda
P0CE10        755 aSSIFCRVG----------------NFDDKMKADRLKVQ---FcndNGDLFT 787  thale cress
XP_002307067  730 aSSIFCRVG----------------SQDDKQKADCLKVQ---FchrSGDLFT 762  black cottonwood
EEF39686      572 aSSIFCRIG----------------TNDDKLKSDCLKLQ---FchqDGDLFT 604  castor bean
1_pfamImport   64 -----TDAIFSgng-------sdsKNEADVERIRRK------FetrEGDHIG 97  
XP_006353197  695 sSSIFCRVG----------------SEGDKLKSDCRKVQ---FchpSGDLFT 727  potato
RVW57564      388 aSSIFCRVG----------------NDEDKLKSDRLKVQ---FchrDGDLFT 420  wine grape
XP_024444034  711 aSNIFCRVG----------------TYDEKLKSDCLKVR---FchhDGDLFT 743  black cottonwood
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap