4BEB


Conserved Protein Domain Family
HSDR_N

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pfam04313: HSDR_N 
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Type I restriction enzyme R protein N terminus (HSDR_N)
This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.
Statistics
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PSSM-Id: 427858
Aligned: 75 rows
Threshold Bit Score: 36.8988
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4BEB_A   30 YQSESDLER-ELIQDLRNQGYEF-----------------ISVKSQSAMLAnvreqlqnlngvvfn-dsewrrfteqyld 90   Escherichia coli
O27023    2 KLNEEALED-----------YFMkelrgmgwndipaaelgRDDPENPLIESelidsirrinqyiedddiqqviqelrgka 70   Methanothermobacter...
O28565    1 MKKEKEQSEdYLSEILKSFGWEE-----------------RKLSPDILDLTefkaalkrlndvdde-dikevlnyletrs 62   Archaeoglobus fulgidus
Q58611    9 IYVHNDIEEn-----LNKLGWKEleg------------yeGEAFSNYIIKPileeqlkiindhige-ykdefiekainkl 70   Methanocaldococcus ...
Q57588   13 KKSEK--------------------------------------------------------------------------- 17   Methanocaldococcus ...
Q9KR78  127 SSSEK-VKKd---------------------------------------------------------------------- 135  Vibrio cholerae
Q9AAH5  110 GMNPEi---------------------------------vRRY------------------------------------- 119  Caulobacter vibrioides
Q8PSV0   61 QLTEFLKSTq------------------------------PEVAESLDLENasptrqkflarlqge-------------- 96   Methanosarcina mazei
Q9I0B0   90 QFLHRlqge----------------------------itkRGV------------------------------------- 104  Pseudomonas aeruginosa
Q98RD2   10 SILEQqleiinkniktdeiy-----------------------------------------------kiqrkiddllrsn 42   Mycoplasma pulmonis
4BEB_A   91 npSDGILDKTRKIHIDy-ICdfi-fdDERLENiylid----kknlMR------NKVQIIQQFEQA-----GSHANRYDVT 153  Escherichia coli
O27023   71 asIEGCKSILEYLKNGvyIKsa---tTGEPRKvkild----hdtpSH------NSFTASRQVVFRr----GDQTIRTDIM 133  Methanothermobacter...
O28565   63 fdVEGSMQILDAIKKGvtIKd----sEGILKTiklid----yanpEA------NSLVFSRQVSF--------ADIIPDIT 120  Archaeoglobus fulgidus
Q58611   71 inEPKPEEILDYIKNGilITldkgrkGQVSNRvklid----ykniEK------NIFNYAHELKFK-----GNDNIIPDFT 135  Methanocaldococcus ...
Q57588   18 ------------------------------RKfklid----ykniDK------NTFFYLCEAEFKg----NPKNSRPDIT 53   Methanocaldococcus ...
Q9KR78  136 --------------------------------------------fSA------NLFSVTRQVCYSn----ANPLEEIDMV 161  Vibrio cholerae
Q9AAH5  120 ---------------------------------------------EA------NRLRVARQVKYA-----VGNENCLDLV 143  Caulobacter vibrioides
Q8PSV0   97 ------------vakrgiievlrnglkHGKYDidlfygtptpgntKAeeryalNRFSVTRQLRYSr----GETQLALDLC 160  Methanosarcina mazei
Q9I0B0  105 ------------------VDvlrkgvSHGPVRvdlyrllptpgntNAaeafgrNIFSITRQVRYS-----HDSGNELDLV 161  Pseudomonas aeruginosa
Q98RD2   43 vhSRRNEEVINVLKDGvtIYre---sEQRSFTwkiid----fensKN------NSWIVTNQFEMIssefgDNRKNIPDIV 109  Mycoplasma pulmonis
4BEB_A  154 ILVNGLPLVQIELKKR-----Gv--AiREAFNQIHRYSKEsf---nsENSLFKYL---QLFVISNGTDTRYFANTTKRDE 220  Escherichia coli
O27023  134 LFINGIPLVNIELKNPvg-msE---TwADAYRQIKDYEKT-------VPELYKYV---QMGVAAEDFARYFPIVPWLDEV 199  Methanothermobacter...
O28565  121 LFVNGIPLAIIECKKMa----K---SwKEGYAQIKRYE-Qs------APELFKYV---QIGFSFADRLVYFPIVRWEESV 183  Archaeoglobus fulgidus
Q58611  136 LFINGIPIIIIEAKREfs-ekE---TyEEAINQINRYERE-------APKLFNYV---QFAIVYGDEKLYIPTYPNEEKE 201  Methanocaldococcus ...
Q57588   54 LFINGIPVVIIEAKATlk--iD---ShLEGISQIRRYEKFs-------PDLFRFV---QFAISYGEEQLYTPTMPNWYKE 118  Methanocaldococcus ...
Q9KR78  162 LFINGIPLITLELKNPwtgqnAv--Y--------HGQK-QyrddrdaNQPLLNFAr-cLVHMAVDTDEVYMTTKLAGKNT 229  Vibrio cholerae
Q9AAH5  144 LYLNGLPVATAELKSDf---tQ---SvEDAINQYRFDREPrpk-ggrEEPLLAFPggaLVHFAVSNSEVAMTTKLQGRDT 216  Caulobacter vibrioides
Q8PSV0  161 LFINGLPVATFELKNSlt--kQ---TvEDAVEQYKRDR-Ds------RELLFQFGr-cMVHFAVDDHEVKFCTQLNGKNS 227  Methanosarcina mazei
Q9I0B0  162 IFVNGLPVLTFELKNSlt--kQ---TvADAIVQYQSTRSP-------QELLFQPGr-cIAHFAVDDAEVYFCTELKGKAS 228  Pseudomonas aeruginosa
Q98RD2  110 IYLNGLPIIVGELQTYy----NttnElERAENQIKNYA-Ls------LPELFAFN---WFSFISNFIGTKIGDPIAKNSH 175  Mycoplasma pulmonis
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