3IYD


Conserved Protein Domain Family
Sigma70_r1_1

?
pfam03979: Sigma70_r1_1 
Click on image for an interactive view with Cn3D
Sigma-70 factor, region 1.1
Region 1.1 modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase. Region 1.1 is also involved in promoter binding
Statistics
?
PSSM-Id: 335564
View PSSM: pfam03979
Aligned: 157 rows
Threshold Bit Score: 31.7291
Threshold Setting Gi: 503322808
Created: 23-Mar-2017
Updated: 23-May-2017
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3IYD_F         7 SQLKLLVTRGKEQGY-LTYAEVNDHLPediVDSDQIEDIIQMINDMGIQVMEEAP--DADDLm-LAENT 71  Escherichia coli K-12
CDE17193      95 NDIQDIIDKAKAKGS-ISNSEIMVSLGdtdYDLDQIDKLYETLEAMGIDVTEDFD-----------DDE 151 Eubacterium sp. CAG:841
CDA05901      10 EKLVELLELAKKKKNvLEYQEINDFFKdqnLEVDQMEKVFDFLEASGVDVLRITG---NDEEliLDDDM 75  Blautia sp. CAG:257
CBL19893      10 EKLVELLELAKKKKNvLEYQEISDFFKdspLEVDQMEKVFDFLEASGVDVLRITD--NSGDEllLDNDM 76  Ruminococcus sp. SR1/5
CDB77622      10 EKLVELLELAKKKKNvLEYQEISDFFKdqpLEVEQMEKVYDFLEASGVDVLRISG---NDDSlmLDDDA 75  Blautia sp. CAG:237
WP_008707631  10 EKLVELLELAKKKKNvLEYQEINDFFKdqpLGVEQMEKVFDFLEASGVDVLRITDs-NADDMilDDDDA 77  Clostridiales
WP_009246158  10 EKLGELMELAKKKKNvLEYQEISDFFKdfpLEPEQMDKVFDFLEANGIDILRIQD--NDMDDliISDDD 76  Lachnospiraceae bacterium ...
WP_022035513  21 AKLQELLALAKKKKNmLEYQEINDHFKdfaLSPEQIDKILDFLEANHVDVLRITD--DDDDIliDDEDN 87  Eubacterium ramulus
CDE46883       9 EKLKELLVCAKKKKNvLESQEIVEHFKdmdLDVSKLEKIYDFLEKQGIDILRIKEekEADDIllEPDDA 77  Clostridium sp. CAG:411
CDC92023      10 EKLHELVEMGKKKKNvLEYKEINEVLKdmeLDSDAMDKLYEYLEAYGIDVLRIPEg-DSDDTflLSDDD 77  Firmicutes bacterium CAG:227
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap