2C35,3H0G,5FJ8,3AYH


Conserved Protein Domain Family
RNA_pol_Rpb4

?
pfam03874: RNA_pol_Rpb4 
Click on image for an interactive view with Cn3D
RNA polymerase Rpb4
This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.
Statistics
?
Aligned: 57 rows
Threshold Bit Score: 48.7043
Threshold Setting Gi: 74879509
Created: 6-May-2019
Updated: 18-Jul-2019
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
2C35_A         41 TLLNSEVHMLLEHRKQQNeSAEDE-----------------------QELSEVFMKTLN-YTAR----------FSRFKN 86  human
Q8IM54          9 FITKFETFLVIKKELEYSrNIDKHlynkylinkddnfkeiyekyfmkLISDKILYKSIHkYIMDtcphvipkniYHKNDN 88  Plasmodium fal...
ABN07733       11 MMTLPELREELI-AIRENrSNGEege------------------dtaRSISYELRKSID-HADS----------LSKCS- 59  Methanocorpusc...
jgi:Hlac_2278  12 YVTTSEAKEILV-EIEAErADde-----------------------dRDLRYELARAIE-HVNR----------FAHLD- 55  Halorubrum lac...
WP_011323550   12 YLTTPEAKELLA-DIEAErALde-----------------------dREMRYELARAIE-HVNR----------FALLD- 55  Natronomonas p...
Q5V586         12 FLTVAETKEILE-DLEMErAAde-----------------------dREMRYELKRAIE-HVNR----------FALLD- 55  Haloarcula mar...
Q18G98         12 YQTVSEVKLLLQ-NIEAErAAea-----------------------dRDLRYELARAIE-HVNR----------FADLD- 55  Haloquadratum ...
Q9HQG9         12 PLTVSEAKALLS-EVETErALde-----------------------dRELRFELSRAIE-HANR----------FALLE- 55  Halobacterium ...
Q2NE43         11 PITISEAKEILMKKVEEKvDENnei--------------------dgHQFTYEQNLTID-YVNK----------FALLD- 58  Methanosphaera...
Q8U216         11 YITIAEAKELLLKRREEEvKAgi-----------------------eEPLYYEARLALE-HAER----------FAKLP- 55  Pyrococcus fur...
2C35_A         87 RET------IASVRSLLLQKK---L-HKFELACLANLCPETAEESKALIPSLEGRFEDEELQQILDDIQTKR 148 human
Q8IM54         89 ESKdiiqdiSNKIVQFFKNIDiydF-DKKEKIQMIDIHCVNIVDLYVIMNYADKKCEEYKIEQILNMLKDVH 159 Plasmodium falciparum 3D7
ABN07733       60 VET------AKSLLAILGSMEk--T-KPEIACRIVNIMPKSRDEIRAIYAKERFTLLPEDLDQILDTLHKFE 122 Methanocorpusculum lab...
jgi:Hlac_2278  56 AEE------SRELVEELTEIEq--I-DLPTAVKIADLLPEDRTELRSVFAQERYSLDGDELDDVLNVVAKYA 118 Halorubrum lacusprofun...
WP_011323550   56 VEE------AQALVEDLRELEk--V-DEATAYKVANLLPEDRDELRTVFAQERYSLSGDELDDILDIVAKYA 118 Natronomonas pharaonis
Q5V586         56 PEE------SLQLVEELEELEk--V-DTPTAYKIANLRPLDRDELRAVFAQERYTLDGDELDEIINIVKQYA 118 Haloarcula marismortui
Q18G98         56 PSD------SRELVDELLTEEk--V-DEPTAIKIADLLPQDRDELRAVFAQERYALNGDELDAILNTVKKYA 118 Haloquadratum walsbyi ...
Q9HQG9         56 PAE------SREFVDELLALDv--LdDEAVAYKIVDLLPRTRTELRSVFANERYAMSGDELDEILDVVAKYV 119 Halobacterium salinarum
Q2NE43         59 ADD------AKELRTKLEEY----L-TPVQAVKVVDLMPEDLDDLRLIFAKERGTFETDALKNILDLLDQYR 119 Methanosphaera stadtma...
Q8U216         56 ADK------AKEAVEELMNAFe--WmSDRIACKIVDIMPEDSMDLRVIFAKEEYQPTQEEMKQILDILDKYR 119 Pyrococcus furiosus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap