3H0G,5FJ8,3AYH


Conserved Protein Domain Family
RNA_pol_Rpb4

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pfam03874: RNA_pol_Rpb4 
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RNA polymerase Rpb4
This family includes the Rpb4 protein. This family also includes C17 (aka CGRP-RCP) is an essential subunit of RNA polymerase III. C17 forms a subcomplex with C25 which is likely to be the counterpart of subcomplex Rpb4/7 in Pol II.
Statistics
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PSSM-Id: 335512
View PSSM: pfam03874
Aligned: 56 rows
Threshold Bit Score: 49.102
Threshold Setting Gi: 74879509
Created: 20-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3H0G_D        24 MLTVSEAKILIEtVLAQRaREtn----------------------gEIPMTDVMKKTVA-YFNV----------FARFKT 70  Schizosaccharom...
Q8IM54         9 FITKFETFLVIKkELEYSrNIdkhlynkylinkddnfkeiyekyfmKLISDKILYKSIHkYIMDtcphvipkniYHKNDN 88  Plasmodium falc...
Q3IPL8        12 YLTTPEAKELLA-DIEAErALd-----------------------eDREMRYELARAIE-HVNR----------FALLD- 55  Natronomonas ph...
Q5V586        12 FLTVAETKEILE-DLEMErAAd-----------------------eDREMRYELKRAIE-HVNR----------FALLD- 55  Haloarcula mari...
Q18G98        12 YQTVSEVKLLLQ-NIEAErAAe-----------------------aDRDLRYELARAIE-HVNR----------FADLD- 55  Haloquadratum w...
Q9HQG9        12 PLTVSEAKALLS-EVETErALd-----------------------eDRELRFELSRAIE-HANR----------FALLE- 55  Halobacterium s...
Q2NE43        11 PITISEAKEILMkKVEEKvDEnne--------------------idGHQFTYEQNLTID-YVNK----------FALLD- 58  Methanosphaera ...
Q8U216        11 YITIAEAKELLLkRREEEvKAg-----------------------iEEPLYYEARLALE-HAER----------FAKLP- 55  Pyrococcus furi...
WP_011833936  11 MMTLPELREEL---IAIReNRsngee----------------gedtARSISYELRKSID-HADS----------LSKC-S 59  Methanocorpuscu...
WP_015910975  12 YVTTSEAKEILv-EIEAErAdd-----------------------eDRDLRYELARAIE-HVNR----------FAHL-D 55  Halorubrum lacu...
3H0G_D        71 AEA------TYACERILGN-R---F-HKFER-AQLGTLCCEDAEEARTLIPSLANKIDDQNLQGILDELSTLR 131 Schizosaccharomyces po...
Q8IM54        89 ESKdiiqdiSNKIVQFFKNiDiydF-DKKEK-IQMIDIHCVNIVDLYVIMNYADKKCEEYKIEQILNMLKDVH 159 Plasmodium falciparum 3D7
Q3IPL8        56 VEE------AQALVEDLRElEk--V-DEATA-YKVANLLPEDRDELRTVFAQERYSLSGDELDDILDIVAKYA 118 Natronomonas pharaonis...
Q5V586        56 PEE------SLQLVEELEElEk--V-DTPTA-YKIANLRPLDRDELRAVFAQERYTLDGDELDEIINIVKQYA 118 Haloarcula marismortui
Q18G98        56 PSD------SRELVDELLTeEk--V-DEPTA-IKIADLLPQDRDELRAVFAQERYALNGDELDAILNTVKKYA 118 Haloquadratum walsbyi ...
Q9HQG9        56 PAE------SREFVDELLAlDv--LdDEAVA-YKIVDLLPRTRTELRSVFANERYAMSGDELDEILDVVAKYV 119 Halobacterium salinarum
Q2NE43        59 ADD------AKELRTKLEEy----L-TPVQA-VKVVDLMPEDLDDLRLIFAKERGTFETDALKNILDLLDQYR 119 Methanosphaera stadtma...
Q8U216        56 ADK------AKEAVEELMNaFe--WmSDRIA-CKIVDIMPEDSMDLRVIFAKEEYQPTQEEMKQILDILDKYR 119 Pyrococcus furiosus
WP_011833936  60 VET------AKSLLAILGSmE---K-TKPEIaCRIVNIMPKSRDEIRAIYAKERFTLLPEDLDQILDTLHKFE 122 Methanocorpusculum lab...
WP_015910975  56 AEE------SRELVEELTEiEq--I-DLPTA-VKIADLLPEDRTELRSVFAQERYSLDGDELDDVLNVVAKYA 118 Halorubrum lacusprofundi
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