4U63,1DNP


Conserved Protein Domain Family
FAD_binding_7

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pfam03441: FAD_binding_7 
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FAD binding domain of DNA photolyase
Statistics
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PSSM-Id: 335323
View PSSM: pfam03441
Aligned: 529 rows
Threshold Bit Score: 159.92
Threshold Setting Gi: 497479692
Created: 24-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4U63_A       295 KEIVWREFCYHLLFHF-PELgEKNWNDSFDA-FSWRDdekS--------------------------FKAWTRGMTGYPI 346
gi 122002560 296 GQLIWREYFYTMSVNN-PNY-AQMSGNPICLdIPWKEpen-------------------------deLQRWKEGRTGFPF 348
gi 122106526 306 GQLIWREYFYTMSVHN-PHY-AEMEANPICLnIPWYEpkd-------------------------dsLDRWKEGRTGFPM 358
gi 321466446 292 GQIIWRDYFYAMSRMN-PKF-DKEVDNPICLqIPWven--------------------------eefFEKWKNGQTGYPF 343
gi 568250174 308 GQLIWREYFYTMSVRN-PHY-GEMDRNPICLnIPWYEpvd-------------------------dsLVRWKEGRTGFPL 360
gi 195055524 310 GQLIWREYFYTMSVNN-PQY-DRMEGNEICLnIPWAKpne-------------------------dhLQRWRLGQTGFPL 362
gi 313228844 302 GQMIYREFFYTVAYTV-NNF-TRIEGNRICKdIKWSDpktne--------------------raaewIEKFKQGMTGYPW 359
gi 615399489 295 hfgslgEMYFGAQAPLsHRF-AQAHNNPQCRfIPWHLp-sKidpstnlvahgssphyevdsqlaeqwFKRWRAATTGFPW 372
gi 340376095 340 SKLLQREFYFLVSSQV-PNF-DTDTQNPICIqLPWEFda--------------------------dgLRRWRSGMTGYPW 391
gi 340376121 333 KNLLMREFAYMVGLTV-PKF-DTMKDNPLCIqLPWEEne--------------------------rfFYAWKEGRTGYPW 384
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4U63_A       347 VDAGMRQLWQHGTMHNRVRMIVASFLIK-HLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGsgadasPFF-------R 418
gi 122002560 349 VDAAMRQLRTEGWLHHVVRNTVASFLTRgTLWLSWEHGLQHFLKYLLDADWSVCAGNWMWVSS------SAFealldsgE 422
gi 122106526 359 IDAAMRQLLAEGWLHHILRNITATFLTRgALWISWEAGVQHFLKYLLDADWSVCAGNWMWVSS------SAFeklldssS 432
gi 321466446 344 IDAGMRQLNQEGWMHHSVRNAVAMFLTRgDLWLNWDIGAEYMANQLVDSDWSVNSGNWMWVSS------SAFerlldcsV 417
gi 568250174 361 IDAAMRQLLAEGWLHHILRNITATFLTRgGLWISWEAGLQHFLKYLLDADWSVCAGNWMWVSS------SAFerlldssK 434
gi 195055524 363 IDAAMRQLLAEGWLHHTLRNTVATFLTRgGLWQNWEFGLQHFLKYLLDADWSVCAGNWMWVSS------SAFerlldtsQ 436
gi 313228844 360 IDAAVRQMKTEGWITHISRFSLASFLTVgQMWCSWEVGQQLFEEFLLDADYALNAGNFLWVTG------SAFanq-ipvK 432
gi 615399489 373 IDALMRQLRATGFVEHLGRHALACFLTRgGCYVHWERGAEVFEELLLDHEVACNAGNWMWLSC------AAFyaq--ffR 444
gi 340376095 392 IDAAIRQMLKEGWIHNLLRESIATFLTRgDLWISWLKGAESFEMYMLDYEPSVSCGCWMKSSS------TAFitg--tiE 463
gi 340376121 385 IDAAMRQIVRDGWSHYSTRQSIAVFLTRgYLWISWEKGLEFFQEHMLDFELPVSTVCWMQSSC------SGFfvd--fiE 456
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
4U63_A       419 IFNPILQGEKFDGDGdYVRRFVPELEKlERKYIHKPFeapkdalkk------------------agvelgktYPLPIVDH 480
gi 122002560 423 CACPVRLGRRLEPTGhYVRRYVPELARmPGEYIYEPWraplevqea------------------agcvigrdYPAPVVDH 484
gi 122106526 433 CTSPIALARRLDPKGeYVRRYLPELKNlPTLYVHEPWkapldvqke------------------cgcivgrdYPAPMIDL 494
gi 321466446 418 CINSVLYGKRLEPSGdYIRRYVPELANfEFEYIHEPWkapidiqrt------------------anciigqdYPAQMVVH 479
gi 568250174 435 CTCPVALAYRLDPTGdYVKRYVPELVNyPAHLVHEPWkatkeeqle------------------ygctigqqYPAPMVDL 496
gi 195055524 437 VSCPVALAKRFDPNGvYIKQYVPELRNvTKEFIHEPWrmtaeqqei------------------aecligvhYPERIIDL 498
gi 313228844 433 ALDPVKLARKWDTHGsFIRRYCPELKNlPTQYICAPWkapqdvqlk------------------araiigvdYPAPMLNA 494
gi 615399489 445 CYSPVAFPQKWDKDGrFVKRWCPELEAyPAKFVYEPWkasiadqkkwgcliteykeadggeeeksgdggmktYPKPMFDF 524
gi 340376095 464 HYNPISYGQQLDPNGdYIRHFVPEVKNlPKEYIFCPWmapievqre------------------agcivgtdYPHPVVDH 525
gi 340376121 457 SYDPCYIGKQMDSDGhFIKLYVPELQDfPSDYIHTPWlaplhvqqq------------------anciigkdYPKPLVDL 518
                        250
                 ....*....|...
4U63_A       481 GKARERALAAYAA 493
gi 122002560 485 TAAAARNRANMQE 497
gi 122106526 495 AAASRANANTMNS 507
gi 321466446 480 EEVLPRNLEWMKE 492
gi 568250174 497 NVVAKRNAHAMSK 509
gi 195055524 499 SLASKRNMAAMKA 511
gi 313228844 495 ATMRIQNLNKIKA 507
gi 615399489 525 AERRKVCIDAMKQ 537
gi 340376095 526 MTAGVICMERLKS 538
gi 340376121 519 CSQGELCCQRVRs 531
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