Conserved Protein Domain Family
Cauli_AT

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pfam03233: Cauli_AT 
Aphid transmission protein
This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus. This protein interacts with the PIII protein.
Statistics
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PSSM-Id: 251817
View PSSM: pfam03233
Aligned: 6 rows
Threshold Bit Score: 183.462
Threshold Setting Gi: 81992929
Created: 16-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75560761   1 MSn-ASANPHIYKK-DKYVRLKSLEpVSSKQRQYYFATddKKSNIKSIAAHCNNLNVVVAKSWLKLSKLLSYLGLEKDES 78
gi 81992929   1 MS--ITGQPHVYKK-DTIIRLKPLS-LNSNNRSYVFSS--SKGNIQNIINHLNNLNEIVGRSLLGIWKINSYFGLSKDPS 74
gi 81985836   1 MSd-LTKLPHIYKKgETIVRLKPLA-INKNDRVYVFSS--AKSNIQSITNSLNNLNEIVGRILLGTWKINSFFGLSKDPS 76
gi 139129     1 MS--LTTYPHIYKK-EQILKLKRLN-KLSNDRKFFFSS--VKGTLPGIISHCNNINEILGRCYLGICKLNSFFGLSKDPS 74
gi 139130     1 MSkdHLDFPHVYKK-NKVLKLKPLD-LSKNPRSYYFSS--QNGSIQAIINHCNNINQITARNWLKLSKVLSYFGLEKDTS 76
gi 81950882   1 MSn-AQANPHIYKK-DKYVRLKPLEpTSSKKRRYIFASndETSSIKTIAAHCNNLNTIVAKNWLKLSKLLSYLGLEKDES 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75560761  79 EaySKNKLPfgQFFKDLTKSFQEGGDNKEEKTNLLPTLQEMSN------RIGKISEETKKLAEQdTVTNKQLEAMVKDFD 152
gi 81992929  75 E--SKSKNP--SVFNTAKTIFKSGGVDYSSQLKEIKSLLEAQNt-----RIKNLEKAIQSLDNK-IEPEPLTKKEVKELK 144
gi 81985836  77 E--STSKNP--SVFDNAKTIFKSGGVDNTALLKEIKTLLESQNt-----RIKNLENQSKSLTDK-IEPEPLTKDEVKDLK 146
gi 139129    75 DklSVSKSP--SVYTLPSKIFKEGGGNGDNTTTQTDILKNAQDqvilskKIDELQTQVKELSSK-IEPEPLTKEDIKKTY 151
gi 139130    77 DsiSKNKSPfnRFLKDISHIFREGEGSTKKASELGEILEKIKN------LDLKIENLNKRIPDN-LVTKALIKELVKDFD 149
gi 81950882  79 EaySKNKVPfgNFFTKLRAS--KVGEDKEKTANLLPTLQEMSS------RIGKISEETKKLAENdVVTNKQLETIIKDFD 150
                       170
                ....*....|....*
gi 75560761 153 KRLKEIQDSVKAIVG 167
gi 81992929 145 ESINSIKEGLKNIIG 159
gi 81985836 147 ESIRFIRDKLKDIIG 161
gi 139129   152 ETLSRIESGLKGIIG 166
gi 139130   150 ERLTEVRDDIKKVIG 164
gi 81950882 151 RRLSEIQNSVKAIVG 165
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