1A0P


Conserved Protein Domain Family
Phage_int_SAM_1

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pfam02899: Phage_int_SAM_1 
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Phage integrase, N-terminal SAM-like domain
Statistics
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PSSM-Id: 308511
View PSSM: pfam02899
Aligned: 29 rows
Threshold Bit Score: 56.532
Threshold Setting Gi: 123769578
Created: 17-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1A0P_A         6 IEQ--FLDALWLEKNLAENTLNAYRRDLSMMVEWLHH---RGLTLATAQSDDL---Q-ALLAERLEGG-YKATSSARLLS 75
gi 81552347   71 ANL--LLNGLSGAKV-SHHTIRAYRKGLDVFLGYAQQ---VGLQLLRPRPNHG---V-AYARWLEAq-gYNTSTVRVRLA 139
gi 2497421    10 LLEsyFRRRLTKQRNATPATMASYRDALRMLILFAATrlrKKPAALVLEELDRdliL-AFLDELEEKRnNTIATRNARLA 88
gi 81343787    4 LEA--WERHLEKTKS--QKTKETYLMLVKEFFKFHKVd--EKEIIENLKPSMV---Y-RFVDESDLNP----SSLLTTLS 69
gi 2497418   118 VQA--YERHLRDARALSRQTIINYRPVVRDFLSFRFGd--GEISLAQLRAADV---T-DFVQKKVSR--LNMRRAKIVTT 187
gi 18202762    4 LDE--FDEHLALRCGRSEHTRRAYLGDLRSLLTHLEG---RGSRLDQLSLPVL---R-SWLATAAGAG-AARTTLARRIS 73
gi 614102621   5 LDE--FDEYLALQCGRSVHTRRAYLGDLRSLFAFLAD---RGSSLDALTLSVL---R-SWLAATAGAG-AARTTLARRTS 74
gi 60392297   89 iIG--FKQYLFEQTEMSHGTVREYVVRLRRLGNYLSE--------QNISHDLL---QdGFLDESLAPW-LPETSTNNYRI 154
gi 123769578  74 lDR--Y-ETILSERGIRPKTLLDYASKIRAIRRKLPD-----KPLTDISTKEV---A-AMLNTYVAEG--KAASAKLIRS 139
gi 2497415    20 LRQ--RMSEDMQVRNFSLNTQLSYLRQVSLFARHFGK------APDLLGREDI---R-TYQVYLANEKkLAPNSIHIAIA 87
                         90
                 ....*....|...
1A0P_A        76 AVRRLFQYLYREK 88
gi 81552347  140 AARKLFAALRWAG 152
gi 2497421    89 AIRSFFH-----H 96
gi 81343787   70 ALRYFLKFLTRRE 82
gi 2497418   188 ALRSFLSYARYRG 200
gi 18202762   74 AVKAFTAWAKWRG 86
gi 614102621  75 AVKAFTAWAVRRG 87
gi 60392297  155 ALRKYQQYKAHQQ 167
gi 123769578 140 TLVDVFREAIAEG 152
gi 2497415    88 ALRFFFSVTLERD 100
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