3DM5,2V3C,1J8M,6CY1,5L3Q


Conserved Protein Domain Family
SRP54_N

?
pfam02881: SRP54_N 
Click on image for an interactive view with Cn3D
SRP54-type protein, helical bundle domain
Statistics
?
Aligned: 1486 rows
Threshold Bit Score: 28.9585
Threshold Setting Gi: 315415326
Created: 4-Jun-2019
Updated: 18-Jul-2019
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
3DM5_A            6 LGKALANTLKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIqRRALEeKppaG----ISKKEHIIKIVYE 81  Pyrococcus f...
CBJ30645        281 LKTSLGGFLHGLTGTKVLEERDLEPVMTKMREQLMGRNVASEVANDITASVqATLID-Q---K----LKSFTRVKTAVQS 352 Ectocarpus s...
EGB09351        269 grsALGSLVANVSGTQTLTRELVDPAMEKLRTTLMEKNVAVEVADAITATVsESLVG-K---K----VERFARAKTLVRD 340 Aureococcus ...
CTP81818        338 ghdGWFSAFRSLVGNKKLTVEDIKPVLDKMRETLIAKNVAADPAEKLCQSVeVKLEG-K---V----VGTFSRVASIVKE 409 Brugia malayi
CAP32620        314 qtgGWFGMLKGLVGEKKLSSEDLTPLVEKMRDNLIMKNVAAEPAEKICQSVvSKLEG-K---V----VNNFSRTAQEVRT 385 Caenorhabdit...
CBY08451        273 tsSSMLSMFKTLVSQKELTEASIDPILQKYKDNLISKNVASEIATKLISAVkNKLVG-Q---T----IGTFSSIKKAVFN 344 Oikopleura d...
Q057I6            5 LTKKITNIFDKISYKSYLEKKTIKKTLNKIKLAFLDADVALNVIKLFLKKIkKKIKK-K---KinknLSPSQNLINIILK 80  Buchnera aph...
icbbe:BCTU_259    5 LTKKLNIFLK-ILHIKVFNKKNIKNTLYKVRCALIKSDVALTVIDSFLRLNkKKSLG-S---AinkdLTPGQTLIKIIFN 79  Buchnera aph...
tigr:RIEPE_0053   5 iSKSFLDLFKTIRDRGIFKKKFLKHHLDKIKTLLIDSDVSVMVVKKILQKIeKEILK-S---KieesFDPSGDFIEIVRK 80  Candidatus R...
PDM83632        323 qsgGWFSAFKGLVGNKKLTADDMAPVLEKMKENLILKNVAAEPADQICQSVaKKLDG-K---V----ISTFSRVNSEVKE 394 Pristionchus...
3DM5_A           82 EL 83  Pyrococcus furiosus DSM 3638
CBJ30645        353 AL 354 Ectocarpus siliculosus
EGB09351        341 AL 342 Aureococcus anophagefferens
CTP81818        410 SV 411 Brugia malayi
CAP32620        386 AV 387 Caenorhabditis briggsae
CBY08451        345 gl 346 Oikopleura dioica
Q057I6           81 EL 82  Buchnera aphidicola BCc
icbbe:BCTU_259   80 EL 81  Buchnera aphidicola (Cinara tujafilina)
tigr:RIEPE_0053  81 TL 82  Candidatus Riesia pediculicola USDA
PDM83632        395 AV 396 Pristionchus pacificus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap