1TAQ


Conserved Protein Domain Family
5_3_exonuc_N

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pfam02739: 5_3_exonuc_N 
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5'-3' exonuclease, N-terminal resolvase-like domain
Statistics
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PSSM-Id: 335070
View PSSM: pfam02739
Aligned: 891 rows
Threshold Bit Score: 97.0647
Threshold Setting Gi: 502592664
Created: 21-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1TAQ_A        13 RVLLVDGHHLAYRTFHA-L-----Kg-LTTS------RG-EPVQAV--------YGFAKSLLKALKE------Dg---dA 61  Thermus aquaticus
Q38CK4         7 AVVLIDGPALIHRWYYRwL--------YTNRnnpvdvKRfAITNARhtiaiahsFDPSHLMQHLLSPqve-ytHtpkhnK 77  Trypanosoma brucei
Q98PK2        10 KFLLIDGNYLVHRSYYVsFk---fKnnFRST--------------I--------YLFFQTIIKIIKN------Lnp--eN 56  Mycoplasma pulm...
Q4A9A5         4 KILLIDGTWLTFKSFFGgFhg----nrLINS------KG-EMTFAV--------HIFFSSVFKLLKL------Lrp--dN 56  Mycoplasma hyop...
WP_049342464   7 QLLIIDGTFLAYRSYYAtSyn--aTqiLTTS------EG-FETNAI--------VAFFKTLFLLLKK------Lnp--kY 61  Mycoplasma hominis
WP_011949345   7 LMLLVDGNFLIFQSFYAsYnkynpNsvLVAK------DG-TTTNGV--------HVFFQTLFKLIKF------Ynp--tH 63  Mycoplasma agal...
WP_013054262   5 nFLIIDGNLLMFQSFYAtYnp-ynSyvMTSN------KG-VTTNGT--------FQFFTTLINLLEE------Lkp--kY 60  Mycoplasma croc...
CDB15781       3 KLLIIDAESLIERAFYA------------IPnmsndeS--LYTNAI--------YGFTKMFFAIKNE------Iq---pD 51  Clostridium sp....
WP_014934638   6 KLFLLDGMSLIYRAHFA-Lgk--aA--TTTA------QG-IKTGAI--------LGFVNTLVKVLQE------Ekp--tH 57  Cardinium endos...
WP_014582860   5 LAVIIDGNAFIYKAYFA------------SQaeliknK--KPDEEI--------SKFFGRTVQVVLNmckpllLrk-dyK 61  Mycoplasma haem...
1TAQ_A        62 -VIVVFD-A-KaP-SFRHEAYGGYKAGRAPTPEDFPRQLALIKELV-DLL----------------GLARLEVP-GYEAD 119 Thermus aquaticus
Q38CK4        78 -LIICFDqG---DgG-RREIYPKYKLNR--EGREVGEELGVIQKVAtKVFlgepkntllivphfdsKLKNV----NAEAD 146 Trypanosoma brucei
Q98PK2        57 -IFIAFD-E-E-GgTWRHDLCKEYKSQRSKMEDEFWNIFKAIREIL-DSI----------------NLNSGGFR-GHEAD 114 Mycoplasma pulm...
Q4A9A5        57 -VYFAFD-F-G-AkTPRHQMYPDYKKGRIKPPDSLFFQMDQIKKIL-SLA----------------NFLWSEHQ-DFEAD 114 Mycoplasma hyop...
WP_049342464  62 -IYIAFD-S-H-VkTFRHELFPSYKDGRKKAPESFYLQLDLIQEIL-TNI----------------NIQNQYYN-GFEAD 119 Mycoplasma hominis
WP_011949345  64 -LFIAFD-A-K-GkTKRHEEYDDYKAGREKAPEIIFEQFDLAKKIL-SAM----------------NIKWFEKV-GYEAD 121 Mycoplasma agal...
WP_013054262  61 -LFIAFD-A-K-GkTKRHEEYPDYKAGRTKAPEIIYEQFESVKKLL-TLL----------------KINHNEIV-GAEAD 118 Mycoplasma croc...
CDB15781      52 lIAAVLEgS---MkTWRHSECNGFKVTRENAPKAFYEQKPYIKEIL-ENF----------------SAVIYERD-GIDAS 110 Clostridium sp....
WP_014934638  58 -LIVVFD-GkE-K-TFRHELFPAYKSHRPAQPEEISIAIPYIKSIL-EGF----------------GILSITGN-GYEAD 115 Cardinium endos...
WP_014582860  62 yAVVVFDsS---KkTFRQEKFQNYKANRASMPAPLLKGLDSIKSML-MGL----------------GFRIINAPqNYEGD 121 Mycoplasma haem...
1TAQ_A       120 DVLASLAKKa--eK-EgyeVRILTADKDLYQLLs-dR------IHVLHp-----E-GYl--------IT-PAW-----LW 169 Thermus aquaticus
Q38CK4       147 DMISTLAQHtqriRiP---TVIMSHDHDLYQLIdeaSrcyyydIRTKHl------------------IS-EKG-----VI 199 Trypanosoma brucei
Q98PK2       115 DVIATITSKfk---dEn-qIYIFSRDKDLLQLIdk-------nVYIThdnelk---------nlisiENfyqnfqlepdq 174 Mycoplasma pulm...
Q4A9A5       115 DLIASLKKKiqkkDnEa-eILIFSADQDLLQLVdk-------kTKVItkikn----------nfiniNT-QEN-----FY 170 Mycoplasma hyop...
WP_049342464 120 DIIAKVKNKf-----Nl-nTIIFSGDQDLNQLIde-------qTAIIkkdktg---------sffflNS-K-N-----FS 170 Mycoplasma hominis
WP_011949345 122 DLIATIAKHn----sQf-nNYIYSKDKDLLQLVnq-------nNSIIKv----vKkVGnfteykletVN-E-------FA 177 Mycoplasma agal...
WP_013054262 119 DLIATVSKIn-----Ev-sKYIYSKDQDLLQLVke-------dISII---------YKnpetkkfatVN-KDN-----FY 170 Mycoplasma croc...
CDB15781     111 DLLATIVNEgqkkSmE---IYIATADKTLLQLSd-dN------IKVIYvq---------------sgINnIKSynktvFI 165 Clostridium sp....
WP_014934638 116 DLLGTLAKKa--aI-MgctTYIMSTDKDLAQMVq-yN------IYLYKpnshgqK-STi--------LG-EKE-----IL 170 Cardinium endos...
WP_014582860 122 DVICTLSHLfhnrEvS---TDIFSTDRDLLQLVt-eNi----tVNILR----------------------SKGlppqeYK 171 Mycoplasma haem...
1TAQ_A       170 EKY-G 173 Thermus aquaticus
Q38CK4       200 ERL-G 203 Trypanosoma brucei
Q98PK2       175 ivdfk 179 Mycoplasma pulmonis UAB CTIP
Q4A9A5       171 ESY-G 174 Mycoplasma hyopneumoniae J
WP_049342464 171 EYY-D 174 Mycoplasma hominis
WP_011949345 178 DIY-G 181 Mycoplasma agalactiae
WP_013054262 171 DIY-N 174 Mycoplasma crocodyli
CDB15781     166 EEY-G 169 Clostridium sp. CAG:221
WP_014934638 171 TQW-E 174 Cardinium endosymbiont of Encarsia pergandiella
WP_014582860 172 HEEfS 176 Mycoplasma haemofelis
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