1GEF,2WIZ,4TKD,1OB9


Conserved Protein Domain Family
Hjc

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pfam01870: Hjc 
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Archaeal holliday junction resolvase (hjc)
This family of archaebacterial proteins are holliday junction resolvases (hjc gene). The Holliday junction is an essential intermediate of homologous recombination. This protein is the archaeal equivalent of RuvC but is not sequence similar.
Statistics
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PSSM-Id: 396442
Aligned: 11 rows
Threshold Bit Score: 84.2969
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1GEF_D   8 AERELIKLLEKHG------------------------FAVVRSAGSKKV-------DLVAGNGKK-YLCIEVKVTKKD-H 54  Pyrococcus furiosus
Q57920  11 FERELKRLLEKEG------------------------FAVIRSAGSKGV-------DLIAGRKGE-VLIFECKTSSKT-K 57  Methanocaldococcus ja...
Q8ZVR2  10 KERELANFFWERG------------------------CAVLRGCSSGGGvrkryvpDVVAICKGK-VLVFEVKYRSKYtP 64  Pyrobaculum aerophilum
2WIZ_B  11 FERDLLVELWKAG------------------------FAAIRVAGSGVSpfp--cpDIVAGNGRT-YLAIEVKMRKEL-P 62  Archaeoglobus fulgidu...
Q8TZ37   9 FERQLVRYLREHG------------------------GEAVRVAGSGGAv------DVVGYAPAMgHVAVECKVRRDD-R 57  Methanopyrus kandleri
Q9HN49  11 RERELVNALDETG------------------------FAVMRAPASGAAtkr-dlpDVLAGNGEE-FYAIEAKSSAGD-P 63  Halobacterium salinarum
O27336   8 GERDLVKLLWEKG------------------------FAAMRAPASGGAtkk-plpDIIAGNGEI-YLAIEVKTTARE-R 60  Methanothermobacter t...
Q9YEX2  10 YERELAKILWERG------------------------WAVIRGPASGGGsrsrvqpDLVAVRGGV-VLVFEIKKARGE-T 63  Aeropyrum pernix
Q9HM02  35 YEREIRDILGGREqavkkyaskipeksdaimsliespFYVTRSAGSFGA-------DVIAIRHDF-SMVIEVKSSV---R 103 Thermoplasma acidophilum
4TKD_C  11 VERNIVSRLRDKG------------------------FAVVRAPASGSKrkd-pipDIIALKNGV-IILIEMKSRKDg-K 63  Saccharolobus solfata...
1OB9_A   9 AERELVSILRGEG------------------------FNAVRIPTSNSSpnp--lpDIFATKGNT-LLSIECKSTWEN-K 60  Saccharolobus solfata...
1GEF_D  55 LYV--------GKRDMGRLIEFSRRF--GGIPVLAVKFl---NVGWRFIEVS 93  Pyrococcus furiosus
Q57920  58 FYI--------NKEDIEKLISFSEIF--GGKPYLAIKF----NGEMLFINPF 95  Methanocaldococcus jannaschii DSM 2661
Q8ZVR2  65 IKI--------EREKLEKLAVFAKRA--GGEAYLLVKYg---RNPWKVLEIR 103 Pyrobaculum aerophilum
2WIZ_B  63 LYL--------SADEVEQLVTFARGF--GAEAYVALKLp---RKKWRFFPVQ 101 Archaeoglobus fulgidus DSM 4304
Q8TZ37  58 LYV--------EKEEIEGLTTFAERF--RAEPLIAWKp----PHVRTGLPLN 95  Methanopyrus kandleri
Q9HN49  64 IYL--------DGEEVESLVYFARNF--GAKPRIGARFd---REDWYFFHPA 102 Halobacterium salinarum
O27336  61 IYI--------DSEKIGALLRFSDIF--GARPYIGIKFr---YRDWIFLSPG 99  Methanothermobacter thermautotrophicus str. Delta H
Q9YEX2  64 VYL--------DPGQVLGLLEWARRA--GGDAWIALRLv---GKGWRFHRAD 102 Aeropyrum pernix
Q9HM02 104 PYLmfsegsgkKQEQANRINEMCTKA--GIFLTYAYRIknvqGDPWKLFVVE 153 Thermoplasma acidophilum
4TKD_C  64 IYV--------RREQAEGIIEFARKS--GGSLFLGVKk----PGVLKFIPFE 101 Saccharolobus solfataricus P2
1OB9_A  61 VKV--------KEHQVRKLLDFLSMFtmKGVPLIAIKFk--qVHEWRVLVPE 102 Saccharolobus solfataricus
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