1OQK,1TSF


Conserved Protein Domain Family
UPF0086

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pfam01868: UPF0086 
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Domain of unknown function UPF0086
This family consists of several archaeal and eukaryotic proteins. The archaeal proteins are found to be expressed within ribosomal operons and several of the sequences are described as ribonuclease P protein subunit p29 proteins.
Statistics
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PSSM-Id: 334717
View PSSM: pfam01868
Aligned: 226 rows
Threshold Bit Score: 67.4094
Threshold Setting Gi: 472461251
Created: 20-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1OQK_A     9 RNIFRHELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMd-DG-----REITVPKGIAVFHFRTPQG--ELVEIDGR 80  Methanothermobacter...
Q5JDH8    41 KNIIWHELIGLKAKVIRASHPELVGIEGYVLDETRNTLVLVG---D-----RVWVVPKDVVEIEFDLgn---ekIRVNGK 109 Thermococcus kodaka...
P60832     3 QNILRHELIGLNLEVVKSTDSGLISTKGRVINETRNTLVLEKe-NG-----KEITLVKEISTFRIQFESEnvVKIDIDGR 76  Methanococcus marip...
A6UWU6     5 YNILRHELIGLDVEITQSTNKSLVGLKGKIVYETRNTINIERfdNS-----KEVMIPKDIAVFKFKLNEE---YIEVIGE 76  Methanococcus aeoli...
Q57903     5 HNILRHELIGLKVEIVEAKNKAMIGIKGKVVDETRNTLVIEKe-DG-----REVVIPKDIAVFLFQLKGC---KVKVDGR 75  Methanocaldococcus ...
Q8TGY6     6 RNIVRHELIGLECRVVKSLGPPYEGLEGRIVDETKNTLVLKT--ES-----GEKVIVKDQVLLELKLPSG--ERVRVDGA 76  Methanopyrus kandle...
A1RXG4     6 KNILRHELIGLEACVVKSKNPSQVGICGLILDETYKTIVIGVp-GG-----PKKRIFKAQVVLRIKLPDG--KELLVDGA 77  Thermofilum pendens...
Q9YF79    10 RQLIPPLLTGLRVKVLAHSDPSLEGLEGWVVVEEARSLRILTl-EG-----RVSTVLKDLAVIEVEApgg--eyIRISGR 81  Aeropyrum pernix K1
CDS36186 123 ENVLRMDLIGARMRVLRSISTKQVDLEGVVTMETRNIFYLATe-DDsstaaQLHIVPKRGTVLLLLMPGA--E-VALNGS 198 Echinococcus multil...
AFH42502   4 SNITFGDLFGSEVEVLMYPDRNVIGLIGIVENETQKTISIYr--NE-----KTITLFKDYIVFKIRSKNS--ETV-IYGN 73  Fervidicoccus fonti...
1OQK_A    81 ALVARPEERIK 91  Methanothermobacter thermautotrophicus
Q5JDH8   110 DLVGRPEMRLK 120 Thermococcus kodakarensis KOD1
P60832    77 LLVGRPEDRLK 87  Methanococcus maripaludis S2
A6UWU6    77 LLMGRPEDRLK 87  Methanococcus aeolicus Nankai-3
Q57903    76 LLIGRPEERLK 86  Methanocaldococcus jannaschii DSM 2661
Q8TGY6    77 LLVGRPEERLS 87  Methanopyrus kandleri AV19
A1RXG4    78 FLVGRPEERLK 88  Thermofilum pendens Hrk 5
Q9YF79    82 VLIGNPLDRVK 92  Aeropyrum pernix K1
CDS36186 199 SLAYRPIDRTl 209 Echinococcus multilocularis
AFH42502  74 EIVGRPEDRTK 84  Fervidicoccus fontis Kam940
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