Conserved Protein Domain Family

pfam01476: LysM 
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LysM domain
The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
PSSM-Id: 334554
View PSSM: pfam01476
Aligned: 160 rows
Threshold Bit Score: 32.3637
Threshold Setting Gi: 81556179
Created: 17-Mar-2017
Updated: 23-May-2017
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
Format: Row Display: Color Bits: Type Selection:
2MKX_A         7 YTVKSGDTLNKIAAQY--------GVSVANLRSWN-GISGDL-IFVGQKLIVK 49  Enterococcus faecalis V583
P44493       294 HIVKKGESLGSLSNKY--------HVKVSDIIKLN-QLKRKT-LWLNESIKIP 336 Haemophilus influenzae Rd KW20
Q9P403       110 HKVKSGESLTTIAEKY--------DTGICNIAKLN-NLADPNfVDLNQDLQIP 153 Colletotrichum lindemuthianum
Q53759       361 HVVKPGDTVNDIAKAN--------GTTADKIAVDN-KLADKNmIKPGQELVVD 404 Staphylococcus aureus
Q9ZJ37       321 HVVLPKETLSSIAKRY--------QVSISSIQLAN-NLKDSN-IFIHQRLIIP 363 Helicobacter pylori J99
O83458        67 HVIAKGETLFSLSRRY--------GVPLSALAQAN-NLANVHqLVPGQRIVVP 110 Treponema pallidum
P74517        87 HQVKEGESLWQISQAF--------QVDAKAIALAN-SISTDTeLQAGQVLNIP 130 Synechocystis sp. PCC 6803
O86394       202 HTVRKGETVKQIAAAIrpkhltleQVA-DALLKANpNVSAHGrLRAGSVLHIP 253 Neisseria meningitidis
O51570       286 HSVAVGETLYSIARHY--------GVLIEDLKNWN-NLSSNN-IMHDQKLKIF 328 Lyme disease spirochete
WP_045166906 266 HTVRSNESLYDISQQY--------GVRLKNIMKANrKIVKRG-IKAGDRVVLP 309 Prevotella intermedia
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