2LEM


Conserved Protein Domain Family
Apolipoprotein

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pfam01442: Apolipoprotein 
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Apolipoprotein A1/A4/E domain
These proteins contain several 22 residue repeats which form a pair of alpha helices. This family includes: Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein E.
Statistics
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PSSM-Id: 307549
View PSSM: pfam01442
Aligned: 112 rows
Threshold Bit Score: 41.5147
Threshold Setting Gi: 81633460
Created: 14-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LEM_A         49 WDTLGSTVSQ----LQERLGPLT---RDFWDNLEKETDWVRQeM------NKDLEEVKQKVQPYLDEFQKKWKEDVELYR 115  house mouse
Q92K98       1505 AAKVSETARQ----ASDMLSTSTrliEGKVDKLSDISSSTLSqIggivgrFEDHSKVLGQASDLLAAAQSNLVSTLEERQ 1580 Sinorhizobium...
WP_013822210 1469 WDKVKAKTEEvwegIKSYLSSAW---ESIKSRAGEAWANLKDaI------SSGWDSIKSATTAAWDAIKDVVSAAWEGIK 1539 Desulfotomacu...
XP_011173704 6698 KDKTIATAKD----TKDKIAEKV---SEDIDKVADATKAAKDkV------TSELKEVGEKMDSTAQDVTQKIADTKDAVV 6764 red fire ant
XP_011059094 4145 EDRTVFIAID----TKDKLADIA---AKDIDKATHDLKAARDdV------VTKTKEVVDKVETSVADVGHDMKDIKDVAV 4211 Panamanian le...
EGI62644     3241 adrvkeakdktvsalkdqkdkvveevskdaqkvadatkaadekV------TDRTKKIGEKIEETSADVAHAAKDIKDAVI 3314 Panamanian le...
EGI62644     3055 adrvkeakdktvsalkdqkdkvveevskdaqkvadatkvagekV------SDETKKIGEKIEETSADVAQIAKDTKDAVI 3128 Panamanian le...
XP_011173704 5580 kdktvstIKD----KKDKVIEKV---SKDAQKVADVTKAAGEkV------ATETKTVGEKIEETAKDVAQAAKDTKEAAV 5646 red fire ant
XP_011173704 4468 lkdlkhkvdsvvdeakeketrvtkdivdQVEKTIDNTKATADkV------IADTKRVAD-------DITQDIADAKDSVT 4534 red fire ant
WP_059410136 1406 PAAVSALVETrerqLAATLDART---QRLQTLFEEAQAGLRDlV------DGRGQEVADAIAARTEGLRTTLDAAPAQMA 1476 Methylobacter...
2LEM_A        116 QKASPQGAElqesaRQKLQELQGRL------------------SPVAEEFRDRMRTHVDSLRTQLAPHSEQMRESLAQRL 177  house mouse
Q92K98       1581 DA----LRTlsvglVQRSEEIERTMralegfvdgafqraeersGQVAGNLRSGIQSSF---------------SDVGRLL 1641 Sinorhizobium...
WP_013822210 1540 NVASAGWEAikngvTAAWEAVKNTT------------------SAAWETIKNAVATAWENIKGVAAAGWEAVKNGITAAW 1601 Desulfotomacu...
XP_011173704 6765 KEVQDDTKKvkeklATGVETVTDGA----------------------GAAKDKATKEAKKVKEKGSGFLSGLFKGTKHAV 6822 red fire ant
XP_011059094 4212 IEAKEDANVikeklAAKAESISDSV----------------------EITKDKTTKEAKKAKEKASGFFSGIFKGSKHSM 4269 Panamanian le...
EGI62644     3315 KEVKDDTKLvkgklAAGADAATEAV----------------------DSAKEKVTKETKKAKEKTTGFFSGIFKGAKHAV 3372 Panamanian le...
EGI62644     3129 KEIKDDTKLvkgklATSADAAAETA----------------------DSAKEKMTKETKKAKEKTTSFFSGIFKGAKHAA 3186 Panamanian le...
XP_011173704 5647 KEMKEDTKLvkeklAASVDATAEAV----------------------DSAKDKATKEAKKAKDKTGRFFSGIFKGAKHSV 5704 red fire ant
XP_011173704 4535 KEVKEDVQAakeklKADDEAVAEGA----------------------VTTKDKITKESKKVKEKGSGFFSGIFKGAKHAV 4592 red fire ant
WP_059410136 1477 DLLDTRLSDlqglfERAQGEIDRLV------------------DSRGRQIAGTIEHRTQALQATIEGVNPAIAGLLEERE 1538 Methylobacter...
2LEM_A        178 AELKSN--PTLNeyhsSAKSHLKSLGEKARPALEDLRHSLM 216  house mouse
Q92K98       1642 SNTEQRatEAAEalrdTLVKASDEAAASVEGVFSQAEERSR 1682 Sinorhizobium meliloti
WP_013822210 1602 ETVKSVttAAWEavknAIGATWDAIKGLVTSALDNVKSLIT 1642 Desulfotomaculum kuznetsovii
XP_011173704 6823 DDVTDDvkEVLDetkkEALLEQEHAKEKAAATLKDLKDKKD 6863 red fire ant
XP_011059094 4270 DSAVDDvkEFLDetkkEAALEQTHVKEAAEAELKNLEHKTD 4310 Panamanian leafcutter ant
EGI62644     3373 EDATDDvkEFLDetkkEAEIEEEHAKEKAAASLKDLKDKKD 3413 Panamanian leafcutter ant
EGI62644     3187 EDVTDDvkEFLDetkkEAEMEEEHVKEKATASLKDLKDKKD 3227 Panamanian leafcutter ant
XP_011173704 5705 EDTTADvkEFLDetkrEASLEKERAEEEVAAGLKDLEDKKD 5745 red fire ant
XP_011173704 4593 EGAADDvkEFVDetkkEAALEEERAKEKLAAGLKDLKDKRD 4633 red fire ant
WP_059410136 1539 TRLAETlkERTGelqtLFDRVQNRLGALVEGTGRDVSERVD 1579 Methylobacterium sp. ME121
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