Conserved Protein Domain Family
5_3_exonuc

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pfam01367: 5_3_exonuc 
5'-3' exonuclease, C-terminal SAM fold
Statistics
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Aligned: 937 rows
Threshold Bit Score: 38.4993
Threshold Setting Gi: 81624612
Created: 27-May-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAN98841             180 VPPEQVRDLLALVGDTSDNVPGVPGVGLkTAAELLAQFGSLSAIYERIG--E-VKK------PRIRESLQQ-NEADARL- 248  Sorang...
MA:Minf_0486         167 VKPSQIPDVLALIGDSVDNIPGVEGIGKkTATKWIIQYGSLFSLLQ-------ARDipdrrfAK----LLEeNKERIMI- 234  Methyl...
EDO06535             227 IPPSRFSEYLALVGDSADNIPGVMGIGPkTAPVLISKYNSFKQIIESDEia---------kiAKRSEKHNV-SVQRAYD- 295  Babesi...
6_pfamImport           1 --ARLIPDFLALIGTRWGKIKKVDHMTEeRAVELLTEYGSLPKLLRNLN--S-IED------PVLRKSLKH-AI--SSIe 66  
EFC46256             259 LPPKLIPEFLALVGDTADNIKGVKGIGKkKAVSLLEQYGSISEILNNLD--D-ENm-----eKKSREAIKS-NIDDLKL- 328  Naegle...
SgoodisonUF:MOS_528  177 LLPKQIPDFKALSGDSSDNIKGVPGIGPkTAKSLISQFDNIENILANLDqlP----------SKMKQKLIE-NKENIIL- 244  Mycopl...
Q4YB74               221 IYPNQYSDYLILAGDKTDGISGIPNIGDkTSKYLLKEYYSIDNILKNI---HnLPP-------KLQTIFIN-NIENINM- 288  Plasmo...
O96139               456 ILPSQYSDYLILTGDKTDGISGVPYIGDkTSKCLLKEYHNIENILKNL---HkLPS-------KLHHIFLN-NIENINT- 523  Plasmo...
XP_002257996         323 LLPAQYSDYLIMAGDKTDGITGIPNIGDkTSKNLLKQFHTIDNILKNL---HnLPQ-------KLHAIFLN-NFENINI- 390  Plasmo...
CDC68591             174 IKPNLYADYKSLVGDSADNIKGIVGVGPkTATKIIRNYGSIDDIYQKIE--Q-IKD------MKIKQLLFD-NQELVRR- 242  Staphy...
CAN98841             249 -SQKLVTLD--GG--APVSLDLET--LRYGG 272  Sorangium cellulosum So ce56
MA:Minf_0486         235 -NWKMLELKdnIE--LPLP--IEE--LRIVP 258  Methylacidiphilum infernorum V4
EDO06535             296 -FHLITKLR--AD--VPVLSSLSQ--LCKKR 319  Babesia bovis
6_pfamImport          67 tSLRIAKLN--DEivLPIP--LAD----LQA 89  
EFC46256             329 -SLRLVALD--EE--VPLDYSLQD--FQVDQ 352  Naegleria gruberi
SgoodisonUF:MOS_528  245 -FKKLTTLK--TN--AKFDFNIADiaLKISl 270  Mycoplasma hyorhinis SK76
Q4YB74               289 -FRKLIKLK--CE--T--NQSINL--SEYKQ 310  Plasmodium berghei
O96139               524 -FRKLIKLK--CE--T--NESLVF--DDYKQ 545  Plasmodium falciparum 3D7
XP_002257996         391 -FRKLIKLK--CE--T--HQSLVL--SEYRQ 412  Plasmodium knowlesi strain H
CDC68591             243 -NYQLIKL----DsiAPIPFEMEE--LVLND 266  Staphylococcus sp. CAG:324
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