Conserved Protein Domain Family
5_3_exonuc

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pfam01367: 5_3_exonuc 
5'-3' exonuclease, C-terminal SAM fold
Statistics
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PSSM-Id: 334509
View PSSM: pfam01367
Aligned: 947 rows
Threshold Bit Score: 36.9433
Threshold Setting Gi: 81624612
Created: 18-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q4YB74        221 IYPNQYSDYLILAGDKTDGISGIPNIGDkTSKYLL-KEYYSIDNILKNI---HnLPP-------KLQTIFIN-NIENINM 288  Plasmodium be...
O05949        169 tTPDKLREVMALIGDRSDNIPGVPSIGPkTASSLI-TKFGSVENIFNSLd--Q-ISSi------KQRKTLQN-AREAALI 237  Rickettsia pr...
Q8I7W9        459 fEPNKFVTFQSLIGDKVDNIPGIPRIGEkTATDII-KKFGNLNSIIENIdqlPq----------KFIEPIRS-SIDQLRI 526  Dictyostelium...
EFA79328      450 vdsefVTTFQSLVGDTSDNIPGVPGLGPkTAISII-NSFGHLKDILENVe--N-LPt-------KLQEKIQN-LKDQIHL 517  Polysphondyli...
XP_004355124  962 VPSHLITSFQALAGDSVDNIPGVPSLGPkSASAII-NSLGHIDNVLANIe--Q-IPl-------KFREKVRN-NSEQIKI 1029 Dictyostelium...
XP_003293552  435 IEPNKLVTLQSLIGDKVDNIPGIPKIGPkTATEII-KQYGTLHEIIDNIealPq----------KFIDPIKN-SIDQLMV 502  Dictyostelium...
CDC68591      174 IKPNLYADYKSLVGDSADNIKGIVGVGPkTATKII-RNYGSIDDIYQKIe--Q-IKDm------KIKQLLFD-NQELVRR 242  Staphylococcu...
WP_012462826  167 VKPSQIPDVLALIGDSVDNIPGVEGIGKkTATKWI-IQYGSLFSLLQ-------ARDipdrrfaK----LLEeNKERIMI 234  Methylacidiph...
KJV76855      192 VRPSQVRDFLSLTGDVSDNIPGIPGIGPkTAIKLL-EQFDSLNNILHNYa--N-IASp------RHRKLIEE-HRQLAEL 260  Orientia tsut...
WP_077304441  194 VEPWQIPDLLALTGDTADNIPGVPGIGQkTAAKLLgNQG-TIDTLYEDLd--N-Vvp------eRIRTLLRE-HRERVFR 262  Leptospirillu...
Q4YB74        289 FRKLIKLK--CE--T--NQSINLSEYKQ 310  Plasmodium berghei
O05949        238 SWKLIGLD--SN--VdlDFDLNNLKWSP 261  Rickettsia prowazekii str. Madrid E
Q8I7W9        527 SYQLAKLN--DN--VsiNLNLDDIKYKP 550  Dictyostelium discoideum
EFA79328      518 SYQLVTLN--KN--VnvP-PLDSLKFNP 540  Polysphondylium pallidum PN500
XP_004355124 1030 SYQLATLS--KQ--AetKVPLEGLKWNP 1053 Dictyostelium fasciculatum
XP_003293552  503 SYQLVTLD--EN--VdlEIPLSSLEFKP 526  Dictyostelium purpureum
CDC68591      243 NYQLIKL----DsiApiPFEMEELVLND 266  Staphylococcus sp. CAG:324
WP_012462826  235 NWKMLELKdnIE--LplP--IEELRIVP 258  Methylacidiphilum infernorum
KJV76855      261 SWQLVGLK--QD--LnlNLSVENLRWSP 284  Orientia tsutsugamushi str. TA716
WP_077304441  263 NKKVTVLH--SD--LalSLEPESLSLSP 286  Leptospirillum ferriphilum
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