Conserved Protein Domain Family
5_3_exonuc

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pfam01367: 5_3_exonuc 
5'-3' exonuclease, C-terminal SAM fold
Statistics
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PSSM-Id: 396094
View PSSM: pfam01367
Aligned: 802 rows
Threshold Bit Score: 38.1167
Threshold Setting Gi: 514994149
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_002583302     216 VWPEQITDLKGIQGDTSDNIPGVRGVAS-AAPLLLGEYGTVENIYEVIheaeqDkkELKElqdfwkNSlgisrsPYKSLT 294  Enteroclos...
Q8DJ89           183 VWPEQIVDYKALCGDASDRIPGIKGIGPkTAVQLLSQYPTLEDIYAHI-----H--EIRP------PS------LRTKLI 243  Synechococ...
WP_015227665     185 IQPQQVIDYKALCGDKSDNIPGVNGIGEkTAVKLLQQYGTLENIYDQI-----D--EIK-------GA------VQKRLI 244  Halothece ...
WP_015191590     195 ITPQQVIDYKALCGDKSDNIPGITGIGDkTAIKLLNEYSTLEGIYQSL-----N--QLK-------GA------VKQKIA 254  Stanieria ...
jgi:UCYN_02670   189 iaSFQVVDYKALCGDKSDNIPGVKGIGEkTAVKLLTEYKTIESIYENI-----E--HIK-------GA------NQKKLK 248  Candidatus...
wustl:cce_2255   189 IKPTQVIDYKALCGDKSDNIPGVRGIGEkTAVKLLSEYGTLEAVYNNI-----E--EIK-------GA------NQKKLK 248  Crocosphae...
jgi:Cha6605_3467 184 VTAAQIIDYKALCGDKSDSIPGVRGIGDkTAVKLLNEYGDLATIYERV-----E--EIL-------GA------NGKKLI 243  Chamaesiph...
jgi:Cyast_2242   178 VKTKQIVDFKALCGDKSDSIPGVLGIGEkTAAKLLQEYNNLENIYSNI-----D--NIK-------GA------IQKKLI 237  Cyanobacte...
WP_015218534     182 VKPSQIVDFKALCGDKSDCIPGVLGIGEkIASNLLAEYETLDNVYHNL-----D--NIK-------SA------VKTKLI 241  Cyanobacte...
jgi:Dehly_0095   187 VPPRLVADFKALVGDASDNIKGVPGIGRkTAVKLLNEFGDIDAIYENIelv-------------rpEK------LRELLR 247  Dehalogeni...
WP_002583302     295 KTGEEgelcgeaaARL--SKELATIKTDIPLDLELEDFSVSF 334  Enterocloster clostridioformis
Q8DJ89           244 NGEAD--------ARH--SRTLAQIVHDVPLELPLEELHLSP 275  Synechococcus elongatus
WP_015227665     245 TGKEN--------AEH--SRYLATIKDDIPLEIDFDELQLKG 276  Halothece sp. PCC 7418
WP_015191590     255 TGKDN--------AFH--SRYLATIDTKTPLKITLEECLLKG 286  Stanieria cyanosphaera
jgi:UCYN_02670   249 EGKSE--------AEH--SRYLAKIITNCPLVFNIDEFKLVG 280  Candidatus Atelocyanobacterium thalassa isolate ...
wustl:cce_2255   249 EGKKE--------AEH--SQYLAEIVTDAPLEFQIERCELKG 280  Crocosphaera subtropica ATCC 51142
jgi:Cha6605_3467 244 AGKDD--------ATH--SQYLAKIITDVPLEIELPETKLTG 275  Chamaesiphon minutus PCC 6605
jgi:Cyast_2242   238 NGEKD--------ALH--SQYLAKIVTDIKLENSLKDYQLTG 269  Cyanobacterium stanieri PCC 7202
WP_015218534     242 NGEKD--------AQH--SQFLAKIVTDINLEISLDDLQLTG 273  Cyanobacterium aponinum
jgi:Dehly_0095   248 R--EE--------AAAreSLKLAIIVTDLPVDFDLERCHVGL 279  Dehalogenimonas lykanthroporepellens BL-DC-9
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