3P83,1EKE


Conserved Protein Domain Family
RNase_HII

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pfam01351: RNase_HII 
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Ribonuclease HII
Statistics
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PSSM-Id: 279667
View PSSM: pfam01351
Aligned: 11 rows
Threshold Bit Score: 190.291
Threshold Setting Gi: 2500560
Created: 13-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3P83_F  15 AGIDEAGKGCVIGPLVVAGVACSDEDR----LRKLGVKDSKKLSQGRREELAEEIRk------------iCRTEVLKVSP 78  Archaeoglobus fulgidus
Q10236  66 LGVDEAGRGPVLGPMVYAVAYCPVDFD----LTNYGFADSKTLASLKREELLKLICnksnelgknvgwstMSISARELAA 141 Schizosaccharomyces p...
O27102   4 LGIDEAGRGPVIGPLVVAGVMIPERKFs--iLRKMGVKDSKKLTPERRRFLARKIRr------------iARVFTVKISA 69  Methanothermobacter t...
P53942  36 MGIDEAGRGPVLGPMVYAVAYSTQKYQdetiIPNYEFDDSKKLTDPIRRMLFSKIYqdneelt-qigyatTCITPLDISR 114 Saccharomyces cerevis...
1EKE_A   4 IGIDEAGRGPVLGPXVVCAFAIEKEREe--eLKKLGVKDSKELTKNKRAYLKKLLEn------------lGYVEKRILEA 69  Methanocaldococcus ja...
P94541  97 IGSDEVGTGDYFGPMTVVCAYVDKTMLp--lMKELGVKDSKDLKDPQIIEIARNLI--------------KTIPYSLLVL 160 Bacillus subtilis sub...
P59660  81 IGTDEVGNGSYFGGLAVVAAFVTPDQHd--fLRKLGVGDSKTLTDQKIRQIAPILK--------------EKIQHQALLL 144 Streptococcus pneumon...
P72657   2 AGVDEVGRGALFGPVVAAAVLVPIEAIn--qLQALGVKDSKQLSPQHRSQLAQALP-------------------DYVHS 60  Synechocystis sp. PCC...
P9WH01  36 AGVDEVGRGACAGPLVVAACVLGPGRIa----SLAALDDSKKLSEQAREKLFPLIC-------------------RYAVA 92  Mycobacterium tubercu...
Q50412  15 CGIDEVGRGPLAGPVVAAAVILDPARLp--kTLLERLDDSKKLSKRNREELAELVP-------------------ATAIL 73  Magnetospirillum magn...
P56121   8 LGIDEAGRGCLAGSLFVAGVACNEKTAl--eFLKMGLKDSKKLSLKKRFFLEYKIK------------------THGEVG 67  Helicobacter pylori 2...
3P83_F  79 ENLD---ErmAAKTINEILKECYAEIIL-RLKPE-IAYVD--SPDVI---------PERLSRELEE---ITG-----LRV 134 Archaeoglobus fulgidus
Q10236 142 GMLRy--R--NKYNLNLQAHDTTIDLIK-KVYES-GINVT--EIYVDtv-----gpPISYQEKLQA---HFPq----AKV 201 Schizosaccharomyces p...
O27102  70 SDIDr--MreRGFNLNEIEKIAIKRIIP-EAQPD-RVIID--SVDVK---------PERLEEEIRS---HFGe----IEV 127 Methanothermobacter t...
P53942 115 GMSKf--PptRNYNLNEQAHDVTMALID-GVIKQ-NVKLS--HVYVDtv-----gpPASYQKKLEQ---RFPg----VKF 176 Saccharomyces cerevis...
1EKE_A  70 EEIN---QlxNSINLNDIEINAFSKVAKnLIEKL-NIRDDeiEIYIDacstntkkfEDSFKDKIED---IIKernlnIKI 142 Methanocaldococcus ja...
P94541 161 KNEKynsMqeKGMSQGKMKALLHNQAIThLLRKLdGVKPE--AILIDqfa---epgVYFNHLKGRD---IVKe-----rT 227 Bacillus subtilis sub...
P59660 145 SPSKyneVigDRYNAVSVKVALHNQAIY-LLLQK-GVQPE--KIVIDaf-----tsAKNYDKYLAQetnRFS-----NPI 210 Streptococcus pneumon...
P72657  61 YGISf--AdvPTINRVNIRQASLLAMER-AVQKL-PVMPA--WVLVDgr-----dtLPHIAMAQMA---VTG-------- 118 Synechocystis sp. PCC...
P9WH01  93 YHVVf--IpsAEVDRRGVHVANIEGMRR-AVAGL-AVRPG--YVLSDgf-----rvPG-LPMPSLP---VIG-------- 149 Mycobacterium tubercu...
Q50412  74 G-FGe--AsvEEIDRINILQATFLAMRR-AYDAL-GRECA--HALVDgn-----rpPG-LPCPVRC---VVG-------- 129 Magnetospirillum magn...
P56121  68 FFVVk--KsaNEIDSLGLGACLKLAVQE-ILENG-CSLVD--EIKIDgnt---afgLNKRYPHIQT---IIK-------- 127 Helicobacter pylori 2...
3P83_F 135 VAEHKADEKYPLVAAASIIAKVERE-REIERLKEK---FGDFGSGYASDPRTREVLKEWIASg--RIPSCVRMRWKTV 206 Archaeoglobus fulgidus
Q10236 202 TVTKKADSLFPIVSLASICAKVTRD-IQLECARESi-rTENWGSGYSSDARTTEWLKVNVDKifgWKGDIVRYSWKTA 277 Schizosaccharomyces pom...
O27102 128 TAEHGADTRYYPVAAASIIAKVERD-LEIESIQKKnrkLGDIGSGYPSDPRTREFLESFTYD---ELPDFVRRSWATV 201 Methanothermobacter the...
P53942 177 TVAKKADSLYCMVSVASVVAKVTRD-ILVESLKRDp--DEILGSGYPSDPKTVAWLKRNQTSlmgWPANMVRFSWQTC 251 Saccharomyces cerevisia...
1EKE_A 143 IAEHKADAKYPVVSAASIIAKAERD-EIIDYYKKIy---gDIGSGYPSDPKTIKFLEDYFKKh-kKLPDIARTHWKTC 215 Methanocaldococcus jann...
P94541 228 YFSTKAEGIHLAVAAASIIARYSFL-MEMDKLSRAagmTLPKGAGPHVDEAAAKLILKKGAS---ALRTFTKLHFANT 301 Bacillus subtilis subsp...
P59660 211 SLEEKAEGKYLAVAVSSVIARDLFL-ENLENLGRElgyQLPSGAGTASDKVASQILQAYGMQ---GLNFCAKLHFKNT 284 Streptococcus pneumonia...
P72657 119 -----GDRKSLLISAASILAKVWRDtLITRLAERFpgyDLASNKGYGTAKHRQGLRQYGATP-------LHRPLFCRK 184 Synechocystis sp. PCC 6...
P9WH01 150 -----GDAAAACIAAASVLAKVSRDrVMVALDADHpgyGFAEHKGYSTPAHSRALARLGPCP-------QHRYSFINV 215 Mycobacterium tuberculo...
Q50412 130 -----GDGISLSIAAASVVAKVRRDaMMADLARAHpefGWERNAGYGTAEHLDALKRLGPTP-------HHRRSFAPV 195 Magnetospirillum magnet...
P56121 128 -----GDETIAQIAMASVLAKAFKDrEMLELHALFkeyGWDKNCGYGTKQHIEAIIKLGATP-------FHRHSFTLK 193 Helicobacter pylori 26695
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