1KRS,1EQR,4RMF,6ILH,3E9H,1EFW,3NEL,2XGT,5XIX,1X54,5ZG8,5GRO,1WYD,5FKU,4AH6,6O3F,1ASY,3DM3,4J15,1YNX,3AMU


Conserved Protein Domain Family
tRNA_anti-codon

?
pfam01336: tRNA_anti-codon 
Click on image for an interactive view with Cn3D
OB-fold nucleic acid binding domain
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (see pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.
Statistics
?
PSSM-Id: 366580
View PSSM: pfam01336
Aligned: 579 rows
Threshold Bit Score: 29.1244
Threshold Setting Gi: 74513618
Created: 24-Apr-2019
Updated: 18-Jul-2019
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1KRS_A     39 VAVAGRMMT-R-----RIMGKASFVTLQDVGGRIQLYVarddlPE----GVYNEQFKKWDLGDILGAKGKLFKT--KTGe 106  Escherichia coli
Q9HL43     42 ILCTGTVTSk------QGDDRMTRITVADPVGNFYVIG-----FSngfnPEEKAMLDKVSVDDRIMVIGKISSY--RNTe 108  Thermoplasma acid...
Q8TZH5     43 aKIVGTVIRePl---iAEDETYGKFQIDDGTGVIWVLG-----FR-----DDTKFAKLVKKGDLVQVIGKIAEW--RDD- 106  Pyrococcus furiosus
Q7RFV8     57 IKIVGFVLSi------EEKKEFIIYTIDDTTGYIKAKY-----LLtysfNSSHEKKNDIKINDIIQIFGVCNTIsiNED- 124  Plasmodium yoelii...
Q7R8M4     82 IIIFGKITNv------KELASAIIFEICDYTGTIEAKY-----NKdaknDKIKNHIENLKVNDHVKIVGGVYSPesKTEq 150  Plasmodium yoelii...
Q8II42     82 IIVFGKVVSi------KELASAIIFEICDYTGNIEAKY-----NKdaknEKVKNHIESIKVNDYIKIVGVVYSP--ESKs 148  Plasmodium falcip...
Q8DRA5    242 LVFEGVVFDvEqk-vtRTGRVLINFKMTDYTSSFSMQK-----WVk--nEEEAQKFDLIKKNSWLRVRGNVEMNn-FTRd 312  Streptococcus pne...
Q8TWR6     46 ALVVGVLSGrYv----DEEREFAVITVTDDTGSVDVFA-----FD-----ECYEPARTLDKWRQIKVIGRPMEP--REEg 109  Methanopyrus kand...
Q975W3    132 TEIEGEISKiDn---iRGG----DVIINVNSSTIIVYK-----ET----GELNIASKLLKVGDTIRVVGAVKPSv-KYG- 193  Sulfurisphaera to...
EDO79731   18 HTVQGRVVSrKplattRTGKPWFSFLLDDDSSDVKVDC-----FT-----DADKFSPQISVGDIIQLKNIGISS--KTPa 85   Giardia lamblia A...
1KRS_A    107 ----------LSIHCTELRLL 117  Escherichia coli
Q9HL43    109 g--------nY---LFSIRPE 118  Thermoplasma acidophilum
Q8TZH5    107 ----------KQILVEGVakv 117  Pyrococcus furiosus
Q7RFV8    125 ----------LSISISSINKL 135  Plasmodium yoelii yoelii
Q7R8M4    151 ----------VQISISYINKM 161  Plasmodium yoelii yoelii
Q8II42    149 e--------sIQISILYINKV 161  Plasmodium falciparum 3D7
Q8DRA5    313 ----------LTMNVQDLQEV 323  Streptococcus pneumoniae R6
Q8TWR6    110 r--------pVALRAEVIRLT 122  Methanopyrus kandleri
Q975W3    194 ----------KIIEAEKIEVI 204  Sulfurisphaera tokodaii
EDO79731   86 drkfdmsrsdYKISIKSGTII 106  Giardia lamblia ATCC 50803
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap