Conserved Protein Domain Family
RNA_helicase

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pfam00910: RNA_helicase 
RNA helicase
This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Statistics
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PSSM-Id: 279280
View PSSM: pfam00910
Aligned: 99 rows
Threshold Bit Score: 59.1717
Threshold Setting Gi: 82005916
Created: 12-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75558927   542 LFFSGPA-GQGKSALCNLliraieghsnflgtrglspeeiEDILAQETFV-HNCSATKWlSGYQ-SQKVMMFEDMCNSK- 617
gi 82008282   169 LWVYGPQgGEGKTSKAKE-----------------------LITRGWFYTrGGKKDDVA-YSYVeDPTRHVVFDIPRDM- 223
gi 81984703   168 IWVYGPHgGEGKSAFAKY----------------------LTLKEGWWYTaGGKATDML-YSYSlDPTCHVCIDIPRCTr 224
gi 81992915   171 IWVYGPNgGEGKSTFARY----------------------LSLKPGWGYInGGKTSDMM-HIITmDPDNHWIIDIPRSH- 226
gi 82008280   170 IWVYGPKgGEGKSTFARY----------------------LSLKQGWGYLpGGPTHDML-HIISgEPKNNWVFDIPRVA- 225
gi 82011474   168 IWVYGSDgGEGKTSFAKE-----------------------LIRYGWFYTaGGKTQDVL-YMYAqDPERNIAFDVPRCS- 222
gi 380877123  168 IWVYGPNgNEGKSQFGKF----------------------LGLKKDYLYLpGGKTQDMT-YMLMkNPKANVVMDIPRCN- 223
gi 82001011   177 LWICGRDgGDGKSVFAKY----------------------LGLKPDWFYTcGGTRKDVL-YQYIeDPKRNLILDVPRCN- 232
gi 82005916   176 IWVYGPQgGEGKTSYAKH----------------------LVKTRDAFYStGGKTADIA-FAWD--HQELVLFDFPRSF- 229
gi 81995954   176 IWVYGPNgGEGKTTYAKH----------------------LMKTKNAFYSpGGKSLDIC-RLYN--YEEIVIFDIPRCK- 229
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 75558927   618 NTgqgdssPLNFLIGAVNNNTAFTDQADVDSKGcvpyaaEMVLVSSNT 665
gi 82008282   224 QEycnyslIEMLKDRIIISNKYEPITNCQVYN-------IHVIVMANF 264
gi 81984703   225 EEyinysvIEQIKNRVIINTKYEPCTIRDDGHN------VHVIVFCNF 266
gi 81992915   227 SDylnygvIEQIKNRVLINTKYEPCVIRKDGQN------VHVIVMANV 268
gi 82008280   226 SEyvnygvLEQVKNRVMVNTKYEPIVIRDDNHP------VHVIVFANC 267
gi 82011474   223 SEmmnyqaMEMLKNRVFASTKYRPVDLCIRKL-------VHLIVFANV 263
gi 380877123  224 SEylnyqfMELIKNRTIYSYKYEPVGCIINNK-------IHVIVLANV 264
gi 82001011   233 LEylnyalLECVKNRAFSSDKYEPLSYLGFDH-------VHVLVFANV 273
gi 82005916   230 EEyvnygvIEQLKNGIIQSGKYQSVIKYSDY--------VEVIVFANF 269
gi 81995954   230 EEylnyglLEEFKNGIIQSGKYEPVLKIVEY--------VEVIVMANF 269
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