5GQ1,5Z3Q


Conserved Protein Domain Family
RNA_helicase

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pfam00910: RNA_helicase 
RNA helicase
This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Statistics
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PSSM-Id: 395730
View PSSM: pfam00910
Aligned: 101 rows
Threshold Bit Score: 59.1405
Threshold Setting Gi: 82005916
Created: 22-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5GQ1_A  10 LIIRGSP-GTGKSLATGIiaraiadkyHSSVYS-LPPDPDHFDGYK-QQVVTVMDDLCQNP-DGk-----DMSLFCQMVS 80 
Q9Z0D5 169 LWVYGPQgGEGKTSKAKEli------tRGWFYTrGGKKDDVAYSYVeDPTRHVVFDIPRDM-QEycnyslIEMLKDRIII 241 Milk vetch dwarf viru...
O91250 168 IWVYGPHgGEGKSAFAKYlt-----lkEGWWYTaGGKATDMLYSYSlDPTCHVCIDIPRCTrEEyinysvIEQIKNRVII 242 Faba bean necrotic ye...
Q83030 171 IWVYGPNgGEGKSTFARYls-----lkPGWGYInGGKTSDMMHIITmDPDNHWIIDIPRSH-SDylnygvIEQIKNRVLI 244 Banana bunchy top virus
Q9Z0D3 170 IWVYGPKgGEGKSTFARYls-----lkQGWGYLpGGPTHDMLHIISgEPKNNWVFDIPRVA-SEyvnygvLEQVKNRVMV 243 Milk vetch dwarf viru...
Q87009 168 IWVYGSDgGEGKTSFAKEli------rYGWFYTaGGKTQDVLYMYAqDPERNIAFDVPRCS-SEmmnyqaMEMLKNRVFA 240 Subterranean clover s...
P0CK61 168 IWVYGPNgNEGKSQFGKFlg-----lkKDYLYLpGGKTQDMTYMLMkNPKANVVMDIPRCN-SEylnyqfMELIKNRTIY 241 Faba bean necrotic ye...
Q66005 177 LWICGRDgGDGKSVFAKYlg-----lkPDWFYTcGGTRKDVLYQYIeDPKRNLILDVPRCN-LEylnyalLECVKNRAFS 250 Coconut foliar decay ...
Q9IR51 176 IWVYGPQgGEGKTSYAKHlv-----ktRDAFYStGGKTADIAFAWD--HQELVLFDFPRSF-EEyvnygvIEQLKNGIIQ 247 Milk vetch dwarf viru...
Q8QTK7 176 IWVYGPNgGEGKTTYAKHlm-----ktKNAFYSpGGKSLDICRLYN--YEEIVIFDIPRCK-EEylnyglLEEFKNGIIQ 247 Banana bunchy top virus
5GQ1_A  81 TVDFIPPMASLAEAGvsftsKFVIASTN 108
Q9Z0D5 242 SNKYEPITNCQVYN------IHVIVMAN 263 Milk vetch dwarf virus (isolate 1)
O91250 243 NTKYEPCTIRDDGHN-----VHVIVFCN 265 Faba bean necrotic yellows virus (isolate SV292-88)
Q83030 245 NTKYEPCVIRKDGQN-----VHVIVMAN 267 Banana bunchy top virus
Q9Z0D3 244 NTKYEPIVIRDDNHP-----VHVIVFAN 266 Milk vetch dwarf virus (isolate 1)
Q87009 241 STKYRPVDLCIRKL------VHLIVFAN 262 Subterranean clover stunt virus (strain F)
P0CK61 242 SYKYEPVGCIINNK------IHVIVLAN 263 Faba bean necrotic yellows virus (isolate SV292-88)
Q66005 251 SDKYEPLSYLGFDH------VHVLVFAN 272 Coconut foliar decay virus
Q9IR51 248 SGKYQSVIKYSDY-------VEVIVFAN 268 Milk vetch dwarf virus (isolate 1)
Q8QTK7 248 SGKYEPVLKIVEY-------VEVIVMAN 268 Banana bunchy top virus
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