Conserved Protein Domain Family
RNA_helicase

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pfam00910: RNA_helicase 
RNA helicase
This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Statistics
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PSSM-Id: 279280
View PSSM: pfam00910
Aligned: 99 rows
Threshold Bit Score: 59.1717
Threshold Setting Gi: 82005916
Created: 12-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q7T7T5  542 LFFSGPA-GQGKSALCNLliraieghsnflgtrglspeeiEDILAQETFV-HNCSATKWlSGYQ-SQKVMMFEDMCNSK- 617  Heterosigma akashiw...
Q9Z0D5  169 LWVYGPQgGEGKTSKAKE-----------------------LITRGWFYTrGGKKDDVA-YSYVeDPTRHVVFDIPRDM- 223  Milk vetch dwarf vi...
O91250  168 IWVYGPHgGEGKSAFAKY----------------------LTLKEGWWYTaGGKATDML-YSYSlDPTCHVCIDIPRCTr 224  Faba bean necrotic ...
Q83030  171 IWVYGPNgGEGKSTFARY----------------------LSLKPGWGYInGGKTSDMM-HIITmDPDNHWIIDIPRSH- 226  Banana bunchy top v...
Q9Z0D3  170 IWVYGPKgGEGKSTFARY----------------------LSLKQGWGYLpGGPTHDML-HIISgEPKNNWVFDIPRVA- 225  Milk vetch dwarf vi...
Q87009  168 IWVYGSDgGEGKTSFAKE-----------------------LIRYGWFYTaGGKTQDVL-YMYAqDPERNIAFDVPRCS- 222  Subterranean clover...
P0CK61  168 IWVYGPNgNEGKSQFGKF----------------------LGLKKDYLYLpGGKTQDMT-YMLMkNPKANVVMDIPRCN- 223  Faba bean necrotic ...
Q66005  177 LWICGRDgGDGKSVFAKY----------------------LGLKPDWFYTcGGTRKDVL-YQYIeDPKRNLILDVPRCN- 232  Coconut foliar deca...
Q9IR51  176 IWVYGPQgGEGKTSYAKH----------------------LVKTRDAFYStGGKTADIA-FAWD--HQELVLFDFPRSF- 229  Milk vetch dwarf vi...
Q8QTK7  176 IWVYGPNgGEGKTTYAKH----------------------LMKTKNAFYSpGGKSLDIC-RLYN--YEEIVIFDIPRCK- 229  Banana bunchy top v...
Q7T7T5  618 NTgqgdssPLNFLIGAVNNNTAFTDQADVDSKGcvpyaaEMVLVSSNT 665  Heterosigma akashiwo RNA virus SOG263
Q9Z0D5  224 QEycnyslIEMLKDRIIISNKYEPITNCQVYN-------IHVIVMANF 264  Milk vetch dwarf virus (isolate 1)
O91250  225 EEyinysvIEQIKNRVIINTKYEPCTIRDDGHN------VHVIVFCNF 266  Faba bean necrotic yellows virus (isolate SV292-88)
Q83030  227 SDylnygvIEQIKNRVLINTKYEPCVIRKDGQN------VHVIVMANV 268  Banana bunchy top virus
Q9Z0D3  226 SEyvnygvLEQVKNRVMVNTKYEPIVIRDDNHP------VHVIVFANC 267  Milk vetch dwarf virus (isolate 1)
Q87009  223 SEmmnyqaMEMLKNRVFASTKYRPVDLCIRKL-------VHLIVFANV 263  Subterranean clover stunt virus (strain F)
P0CK61  224 SEylnyqfMELIKNRTIYSYKYEPVGCIINNK-------IHVIVLANV 264  Faba bean necrotic yellows virus (isolate SV292-88)
Q66005  233 LEylnyalLECVKNRAFSSDKYEPLSYLGFDH-------VHVLVFANV 273  Coconut foliar decay virus
Q9IR51  230 EEyvnygvIEQLKNGIIQSGKYQSVIKYSDY--------VEVIVFANF 269  Milk vetch dwarf virus (isolate 1)
Q8QTK7  230 EEylnyglLEEFKNGIIQSGKYEPVLKIVEY--------VEVIVMANF 269  Banana bunchy top virus
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