Conserved Protein Domain Family
IMS

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pfam00817: IMS 
impB/mucB/samB family
These proteins are involved in UV protection.
Statistics
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PSSM-Id: 334269
View PSSM: pfam00817
Aligned: 84 rows
Threshold Bit Score: 77.6104
Threshold Setting Gi: 122017977
Created: 14-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122156718  11 LDLDAFYCQVE---RAAH---GIdVNVPLVVAQYdpferggvrtrdqgarrilrdglerHSLIAVSYEARARGVKRNMRA 84
gi 122017977  97 VDIDMELEPVDlgkLALpl-hLMeTIPPDVIANIva---------------------kdKTIVFSPHRKKHDVMRRIMRM 154
gi 123574056  11 PDFDVALARAA------Dp--GL-ESRPLAVATGvs---------------------erALLRCVSAEARSDGVQPGMSV 60
gi 122301929   6 LHFARFPAQRK---VIESp--GL-AGKPFALVEEvr---------------------gqRRVAFASTSALKAGARAGMTL 58
gi 123065982   9 IWFPHFGADRL---MRRNp--QL-ATVPLGVVEEqh---------------------nsQVLTSLNAAAAQAGLRVGQPV 61
gi 499844111   5 IYAREFPAQAL---LRLRp--EL-RQKPVAVMEGep---------------------prEFVCAANEFAYRMGVQRGMTR 57
gi 500083964  13 LDYLRHVQGLA-------------LSMPLILYDVa-----------------------kARVLKACPQAASAGVMAGQSM 56
gi 500017077   8 LDIPNFYAVLE---ELRRp--EL-KKRSMVLAEPsa----------------------rAIVQGINSNAGKEGIREGMPL 59
gi 501124559  13 INVAHFAVTVE---QTLDa--RL-RDRPVLIAPAga---------------------arTPVYDMSQEAFASGIRKGMPV 65
gi 159118104 259 VYVDAFFISSSlsfLSSNertRL-IGAPVIIANQfdske----------------andgAIILDCTKAAKQMGIESGMTV 321
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122156718  85 IDARRL---------C---G-DgA---VVVqvptrrsKADLTAYRRAGAAVARILSRGgV--MERAS-IDEAYL------ 139
gi 122017977 155 KYRYSVqslgkvfhfCffsPtDtTsngAVR-------KITLEDFQRVKDKL-RMLTRFiI--VDKRW-PLEVSV------ 217
gi 123574056  61 YVARKC---------C---P-A-L---HLL-------PPQAELAQRATRVFGELAACCsP--LWEPGsPGRFFI------ 108
gi 122301929  59 TAANAL---------E---P-A-L---QHF-------AYRAEEEARALSSLGEALLCVaP--AFQLAaPDGLWF------ 106
gi 123065982  62 RDAHAM---------C---E-K-L---VTR-------ARSQPAEAAFLTALQRWAGKFsP--WVAPEgHDALVI------ 109
gi 499844111  58 PQMEVL---------------EaV---ETL-------RRSRAEEDAARAALLECAGRFsPr-------VEELRFeytlav 105
gi 500083964  57 GSAAQL---------C---P-E-V---QPF-------PFDLSLHRQGSDWLCRHGYSFsArlVPPPE-PDTLFArchdvl 111
gi 500017077  60 AHARRM---------C---R-R-V---LAV-------APDLRFYREEHQQILKEFGFF-SplVEGAW-PGHYFV------ 107
gi 501124559  66 AGALKA---------C-----RdC---KVV-------PLYPARYERAMQTIAKYAGAYtPv-VEQGSgDGHLFL------ 114
gi 159118104 322 GEAFER---------C---P-T-T---QVL-------SYDTKMYNTKGQELFKVLGQF-SkaIMPMN-YNEAVL------ 369
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122156718 140 --DLTAnaRRTLAETEwrevlatarkahvagaapiggkgfvskaslragsadgpqaaveacaastsgvtdektekeleke 217
gi 122017977 218 --EVTP--IIERAPSEnn-------------------------------------------------------------- 231
gi 123574056 109 --DLTG--SRRLLGAT---------------------------------------------------------------- 120
gi 122301929 107 --DASA---AHLFGGE---------------------------------------------------------------- 117
gi 123065982 110 --DLTG--CAHLFGGE---------------------------------------------------------------- 121
gi 499844111 106 gaDISG--TEKLLGTT---------------------------------------------------------------- 119
gi 500083964 112 llETGS--MAKLFGGE---------------------------------------------------------------- 125
gi 500017077 108 --DLTG--TQRLLGPG---------------------------------------------------------------- 119
gi 501124559 115 --DVTG--TSRLFGPP---------------------------------------------------------------- 126
gi 159118104 370 --DLSG--HVSLSAANgn-------------------------------------------------------------- 383
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 122156718 218 teaepvdeeeermrnyrprppdeaslawwdreesawgetekllaagAYICHNLRKACVDELGYTLSAGIATNKMLAKLTS 297
gi 122017977 232 --------------------------------------------slVDVANMLSRVLADELRIGAWCGISSTPVLAKMAC 267
gi 123574056 121 ----------------------------------------------LDVAARLERDIVERLRLSATCGMAGNKLVARIAA 154
gi 122301929 118 ----------------------------------------------EGLCLRALEVCSGHG-YRGRAVVASELFTSQALA 150
gi 123065982 122 ----------------------------------------------ESLLQVVQQDCEDLG-LSVRMGLADTRGAAWALA 154
gi 499844111 120 ----------------------------------------------EQIVRRMCEHAAVMG-MEVSVAASCNFDAALCWA 152
gi 500083964 126 ----------------------------------------------AALAKALAAALEGLN-CSFAMAFAATPLAAGVLA 158
gi 500017077 120 ----------------------------------------------PDVACRMERHLATQRRLRARIGLAANKLVSQVAS 153
gi 501124559 127 ----------------------------------------------PDIAWRLERQIKKDFGLAPAWSVAANKLVAKVAT 160
gi 159118104 384 --------------------------------------------scLALGLQLQQRVLQETGLHCSLGFGDSLFAAQIAT 419

                 .
gi 122156718 298 G 298
gi 122017977 268 E 268
gi 123574056 155 D 155
gi 122301929 151 R 151
gi 123065982 155 R 155
gi 499844111 153 K 153
gi 500083964 159 K 159
gi 500017077 154 T 154
gi 501124559 161 R 161
gi 159118104 420 K 420
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