1GZ0,4X3M,2HA8,3ILK,3KTY


Conserved Protein Domain Family
SpoU_methylase

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pfam00588: SpoU_methylase 
Click on image for an interactive view with Cn3D
SpoU rRNA Methylase family
This family of proteins probably use S-AdoMet.
Statistics
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PSSM-Id: 334162
View PSSM: pfam00588
Aligned: 129 rows
Threshold Bit Score: 90.2733
Threshold Setting Gi: 81736103
Created: 16-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1GZ0_A       105 PFLLIlDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAqL-NATAKKVaCGAAESVPl-IRVTNLARTXRXLQEEni--w 180 Escherichia coli
Q58871         4 MISVIlVNPKYSGNVGSIARVMMNFGFEELRIVGDKSIi--NNEAYMMaVHAREILDnaKFYNTFDEAIGDLDFV----- 76  Methanocaldococ...
Q5JGC0         1 mISVVlVEPEGPANIGMIARTMKNFGFSRLVLINPNL----TEESYAYaVHARDVLEnaLILDSFEKALELFDFT----- 71  Thermococcus ko...
O27877        10 NISVVfVEPETPGNIGFLARAMKNFGLRTLILINPCEL---EDEAYYQaMHARDIVEgaLIYRDLSEMIDSLEPDflv-g 85  Methanothermoba...
Q8TXY9         2 DVRVVlVEPKYDGNIGHVARVMKNFGVKELFLVRPRSEl--GEVAIARaMHALDLLEnaVIVNTLEEAIEDVEAAiatta 79  Methanopyrus ka...
Q7U8A3         2 TVVVVlVEPAGPLNIGSVARLCANFGVDALRLVNPRCE-VlCDDALRMaVHATPLLRqaTIHPDLEAAIGDCSRV----- 75  Synechococcus s...
Q7VBF1         9 PLKIIlVEPLGEINLGSIARLCENFGVDELRLVSPRCd-PmNIETQKMaVHGKRFLKnaCIYSNLLDAVNDCVRVva--- 84  Prochlorococcus...
Q7V131         7 NLNVVlVEPNGPLNVGSIARLCSNFDVNELRIVSPKCd-IfSLEAKKMaLKGYRYIDncKIFNSIEQAIFDCDLVia--- 82  Prochlorococcus...
Q8YNM2         5 GVRIVlVEPSGPLNVGAIARVMKNFGLAHLVLVSPQCd-PlSEDAMRMaVHAKEILEsaITVPTLPAALHGCVRAia--- 80  Nostoc sp. PCC ...
WP_009991324   1 MIRVVlVEPEGEYNIGFVARLCKNFLVDELYIVNPRAN---ISEAFRFsAGGREILEkaKIVNTFDKAINDVDIKia--- 74  Sulfolobus solf...
1GZ0_A       181 iVGTAG----EAD------HtLY----QS----------KXT-------GRLALVXGAEGEGXRRltREHCDeLISIPXa 229 Escherichia coli
Q58871        77 -IATSGa--rGGDrnlkrvP-IT----PK----------ELAdkilevkGNIGIVFGREDDGLRNeeIDKCDlLVSIPTs 138 Methanocaldococ...
Q5JGC0        72 -VGTTGk---PGK------R-FIphraPLmpwelvglikDYP-------GEVGIFFGRESIGLKNeeLDAMDvTLTIPTs 133 Thermococcus ko...
O27877        86 tTGVPG----GSY------N-VD----RIpl------rpSQLadairpsSGTFILFGREGDGLSNeeIGLCDmVVSVPTs 144 Methanothermoba...
Q8TXY9        80 vLASTP----ARN------P-MM----PWev------reAFSd-----yEKIAVVFGPEDRGLRTweVELCDaTLHIPTs 133 Methanopyrus ka...
Q7U8A3        76 -IATCGrldhGGI------P-LQ----TPdt------aiNWLla---gdPPHALVFGREDRGLTNdeLRLCQrVLTLHSq 134 Synechococcus s...
Q7VBF1        85 tCGRIDh---GDI------P-LH----TSkn------alQWLlet-npkDPIAIIFGREDRGLSNseLQIAQkIITLKTs 143 Prochlorococcus...
Q7V131        83 tFGRIDl--sNDI------E-CE----SPed------isKWIssf-veiNNLGILFGREDRGLSNneLLFAHkILNIKTs 142 Prochlorococcus...
Q8YNM2        81 tSGRDNd---WGL------T-LE----TPri------alPWLlee--tgQPSALIFGREDRGLSNeeLIYAQrFIRIPTs 138 Nostoc sp. PCC ...
WP_009991324  75 tSSIADn---NGD------I-LR----KSi--------rPWEilpliqgKKIALIFGRESVGLTReeIFKCDfLLYIPAn 132 Sulfolobus solf...
1GZ0_A       230 GSVSSLNVSVATGICLF 246 Escherichia coli
Q58871       139 EKYPIMNLSHAVAVILY 155 Methanocaldococcus jannaschii DSM 2661
Q5JGC0       134 EEYPVMNLAQAAAVVLY 150 Thermococcus kodakarensis KOD1
O27877       145 EEYPIMNITHAAAIIFY 161 Methanothermobacter thermautotrophicus str. Delta H
Q8TXY9       134 EEYRSMNLSHSVAVVLY 150 Methanopyrus kandleri
Q7U8A3       135 AAYPSLNLSHAVAVVLH 151 Synechococcus sp. WH 8102
Q7VBF1       144 EKYPSLNLSHAVAIVLH 160 Prochlorococcus marinus
Q7V131       143 QNYPSLNLSHAVSIILY 159 Prochlorococcus marinus subsp. pastoris str. CCMP1986
Q8YNM2       139 PDYLSLNLASAVGICCY 155 Nostoc sp. PCC 7120
WP_009991324 133 PSYPVLNLSHAVGIVLY 149 Sulfolobus solfataricus
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