4NNH,3CDI,5XQ5,5X8R,5XGU,2C35,1SMX,2B8K,2IX1,1LUZ


Conserved Protein Domain Family
S1

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pfam00575: S1 
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S1 RNA binding domain
The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.
Statistics
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Aligned: 41 rows
Threshold Bit Score: 49.9503
Threshold Setting Gi: 23200371
Created: 14-Mar-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4NNH_A   13 THAIGQIVPGKVTKLVP-FGAFVRV-Ee--GIEGLVHISELSER------------HVE-----VPDQVVQVGDDAMVKV 71   Mycolicibacterium s...
P34703 1180 EHMLGDSRQG-GCPGTP-VGIRVRF-Dn--GMTGFCPNKNISSS------------HVD-----NPLTRVKINQPYYFKV 1237 Caenorhabditis elegans
P48514  141 KDKEGQVLTGVVTRVDNrGNVFVEL-G---RGEAYLPRSEQI-----------------------PTEKYHPGQRIKVYL 193  Thermus thermophilu...
P14129  455 ELRKNAVVSAEVIGVND-GGIEVRL-VnheDVTAFIRRADLSRD------------RDE-----QRPERFSVGQTVDARV 515  Sinorhizobium melil...
P30850  557 KAGTDTRFAAEIVDISR-GGMRVRL-Vd-nGAIAFIPAPFLHAVrde-------lvCSQ-----ENGTVQIKGETVYKVT 621  Escherichia coli K-12
Q31QE3  115 lqTEDATVRSEVFATNR-GGALVRI-E---GLRGFIPGSHISTR---------------------KAKEDLVGEELPLKF 168  Synechococcus elong...
P38494   98 KFETKEVFEAEVKDVVK-GGLVVDI-G----VRGFIPASLVEA--------------HF-----VEDFTDYKGKTLSLLV 152  Bacillus subtilis s...
P46836  119 LKEKDEAVKGIVIEVVK-GGLILDI-G----LRGFLPASLVEMR--------------R-----VRDLQPYIGKEIEAKI 173  Mycobacterium lepra...
P44440  572 KVASNAEFEAEVQDVMR-AGLRVQL-Le-nGASLFIPAATLHNNkeeiqlnpdelaLYI-----KGERTYKIGDMVKVKL 643  Haemophilus influen...
2IX1_A  577 KAGTDTRFAAEIVDISR-GGMRVRLvDn--GAIAFIPAPFLHAV------------RDElvcsqENGTVQIKGETVYKVT 641  Escherichia coli
4NNH_A   72 IDIDLERRrISLSLK 86   Mycolicibacterium smegmatis MC2 155
P34703 1238 LKLDKERFsLFLSCK 1252 Caenorhabditis elegans
P48514  194 KKVDKSAKgPSLLVS 208  Thermus thermophilus HB8
P14129  516 TNFSKKDRkIQLSIK 530  Sinorhizobium meliloti 1021
P30850  622 DVIDVTIAeVRMETR 636  Escherichia coli K-12
Q31QE3  169 LEVDEDRNrLVLSHR 183  Synechococcus elongatus PCC 7942
P38494  153 VELDRDKNrVILSHR 167  Bacillus subtilis subsp. subtilis str. 168
P46836  174 IELDKNRNnVVLSRR 188  Mycobacterium leprae TN
P44440  644 TEVKEATRsIVGEIL 658  Haemophilus influenzae Rd KW20
2IX1_A  642 DVIDVTIAeVRMETR 656  Escherichia coli
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