3U5P,3IU5


Conserved Protein Domain Family
Bromodomain

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pfam00439: Bromodomain 
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Bromodomain
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Statistics
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PSSM-Id: 306857
View PSSM: pfam00439
Aligned: 44 rows
Threshold Bit Score: 48.0837
Threshold Setting Gi: 156847669
Created: 12-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
3U5P_G         86 CERLL----L---YLYCHE--LSIEFqe------pVPASIPNYYK-------IIKKPMDLSTVKKKLqkkHSQHYQ---I 140
gi 74607844   209 LEAAS----N---NNLDDTlnICQPFle-----lvDKDEYPEYEE-------VIRLPNSLNLVKNNL---ELGYYH---K 263
gi 73921624   786 FVSVM----S---HQDDEG--RCYSDsl-----aeIPAVDPNFPN---------KPPLTFDIIRKNV---ENNRYR---R 836
gi 123434640   13 CAEKT----Q---LMIQNN--FSQWFrdp---phnSIRNYDQYLA-------VVKYPISLSEIADRI---RLNIYQ---Y 67
gi 123412148   13 MDNLL----A---HPISNY--FKFEVv-------pGVDADVDYTD-------YVKNPQDLNTIKKRL---EGNQYN---N 63
gi 159108242   25 IRTVL----R---DSMKPL--DSFTLf--------QNPVVVDYPDlkqqyeaVIEFPCSLSEIKQRLsnrSGNTYT---H 84
gi 758985650  278 YSAVLdcirN---HIDATGrrPAEHLeq-----cpDPEVDPDFYE-------KVEKPTSLSAISQRI---QEGEYP---K 336
gi 156847669   24 LEEEF----Pa--DFFEDD--PAKIYesylgflqnNTVVDGNFIS---------NNQLKLTTINAKY---ENKEYNvdnG 83
gi 123476334    9 LLQEM----D---TMMKDE--MYVPFnd------fLGYVSEEYHQ-------KIARPIDLNTVKANL---ENRQYH---R 60
gi 123430914    6 YQKVF----EataEFLKDP--FHEIFhtm---vflNDASLPEYSK-------YVSKPIALEVIKANL---ESKKYS---T 63
                          90       100       110
                  ....*....|....*....|....*....|...
3U5P_G        141 PDDFVADVRLIFKNCERFNE-MMKVVQV-YADT 171
gi 74607844   264 IYDFITDVNLTFQNALVFND-EDTTIYS-DALK 294
gi 73921624   837 LDLFQEHMFEVLERARRMNR-TDSEIYE-DAVE 867
gi 123434640   68 VFEWDNDMQAVFKNAMAFNS-KNSQPYF-IAQY 98
gi 123412148   64 LYSWMQDVEIVWANAERYNG-SGSDMGI-AARE 94
gi 159108242   85 IGDVFCDLCLTISNAMTFNK-SNTVILE-QVRI 115
gi 758985650  337 ATDFEMDMLQLFENARRLHP-IGTQMYG-DAVV 367
gi 156847669   84 FYKLYHDIKLVCTMLVHYYP-QGTRNYQ-IIDK 114
gi 123476334   61 YIDWYHDMELVFKNTIEFYKnEQFSPYPpMATY 93
gi 123430914   64 PAEWYNDINRMYQNAIEYHY-KSPVGTK-EIGI 94
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