6IFS,1I4W


Conserved Protein Domain Family
RrnaAD

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pfam00398: RrnaAD 
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Ribosomal RNA adenine dimethylase
Statistics
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Aligned: 13 rows
Threshold Bit Score: 242.656
Threshold Setting Gi: 3024184
Created: 22-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6IFS_A        19 GFSFKKSLGQNFLIDTNILNRIVDHAEVT------EKTGVIEIGPGIGALTEQL-AKRA--KKVVAFEIDQRLLPILKDt 89  Bacillus subtil...
P07287        32 RDRNRRQFGQNFLRDRKTIARIAETAELR------PDLPVLEAGPGEGLLTREL-ADRA--RQVTSYEIDPRLAKSLREk 102 Saccharopolyspo...
Q5HNP6         1 MNQKNPKDTQNFITSKKHVKEILNHTNIS------KQDNVIEIGSGKGHFTKEL-VKMS--RSVTAIEIDGGLCQVTKEa 71  Staphylococcus ...
P41819        27 VFKFNTDLGQHILKNPLVAQGIVDKAQIR------PSDVVLEVGPGTGNLTVRI-LEQA--KNVVAVEMDPRMAAELTKr 97  Saccharomyces c...
P14908        11 ISKLKFFYGFKYLWNPTVYNKIFDKLDLTktykhpEELKVLDLYPGVGIQSAIFyNKYCp-RQYSLLEKRSSLYKFLNAk 89  Saccharomyces c...
P87250        14 ANKIHTSYGSQFEKNPKVINQILDKLNLEsyy-ksESLQILDIYAGPLIQSVIL-NERLkpKKHVLLEDRLKFVELYQAt 91  Kluyveromyces l...
P37468        19 GFSFKKSLGQNFLIDTNILNRIVDHAEVT------EKTGVIEIGPGIGALTEQL-AKRA--KKVVAFEIDQRLLPILKDt 89  Bacillus subtil...
P06992         8 GHLARKRFGQNFLNDQFVIDSIVSAINPQ------KGQAMVEIGPGLAALTEPV-GERL--DQLTVIELDRDLAARLQTh 78  Escherichia col...
P44749         8 GHTARKRFGQNFLHDTSVIQGIVAAIYPQ------PNQFLVEIGPGLGALTEPV-GELV--DHLTVVELDRDLAERLRHh 78  Haemophilus inf...
Q9US51        26 NLNGRSSYKSSYLVNQNLMDEALVKSNLLkey-nsEKMTILEMAPGPGVTTTSL-FNYFqpKSHVVLESREVFSKPLQK- 102 Schizosaccharom...
1I4W_A        23 ISKLKFFYGFKYLWNPTVYNKIFDKLDLTktykhpEELKVLDLYPGVGIQSAIFyNKYCp-RQYSLLEKRSSLYKFLNAk 101 baker's yeast
WP_015141733  12 gmNKNIKYSQNFLTSEKVLNQIIKQLNLK------ETDTVYEIGTGKGHLTTKL-AKIS--KQVTSIELDSHLFNLSSEk 82  Clostridium per...
WP_015431539   4 kklpvRFTGQHFTIDKVLIKDAIRQANIS------NQDTVLDIGAGKGFLTVHL-LKIA--NNVVAIENDTALVEHLRKl 74  Pasteurellaceae
6IFS_A        90 lS---PYENVTv-IHQDVLKADVKSvieeq--------------fqdcDEIMVVANLPY-YVTTPIIMKLLE-------E 143 Bacillus subtil...
P07287       103 lS---GHPNIEv-VNADFLTAEPPP-----------------------EPFAFVGAIPY-GITSAIVDWCLE-------A 147 Saccharopolyspo...
Q5HNP6        72 vN---PSENIKv-IQTDILKFSFPKh----------------------INYKIYGNIPY-NISTDIVKRITF-------E 117 Staphylococcus ...
P41819        98 vRgtpVEKKLEi-MLGDFMKTELPYf------------------------dICISNTPY-QISSPLVFKLIN-------Q 144 Saccharomyces c...
P14908        90 fE----GSPLQi-LKRDPYDWSTYSnlideerifv---pevqssdhinDKFLTVANVTg-EGSEGLIMQWLScignknwL 160 Saccharomyces c...
P87250        92 ----lKDHPSMvnYNKNPYKWETFLemtnedrvlt---psmqkrdhihNEFLIAANLTn-KKGEQLYVQYLQcianqnwM 163 Kluyveromyces l...
P37468        90 lS---PYENVTv-IHQDVLKADVKSvieeq--------------fqdcDEIMVVANLPY-YVTTPIIMKLLE-------E 143 Bacillus subtil...
P06992        79 pF---LGPKLTi-YQQDAMTFNFGElae-----------------kmgQPLRVFGNLPY-NISTPLMFHLF--------S 128 Escherichia col...
P44749        79 pF---LHQKLTv-IETDAMQFDFGAlytken------------laekgQKLRVFGNLPY-NISTPLMFHLFK-------- 133 Haemophilus inf...
Q9US51       103 -LctlSDGRIKw-VHQDGYYWQTYEdvyvskvldpriqteeeqklsphRELLFFAHLPHgYAGLLFVSQILDflsardwL 180 Schizosaccharom...
1I4W_A       102 fE----GSPLQi-LKRDPYDWSTYSnlideerifv---pevqssdhinDKFLTVANVTG-EGSEGLIMQWLScignknwL 172 baker's yeast
WP_015141733  83 lK---LNTRVTl-IHQDILQFQFPNk----------------------QRYKIVGSIPY-HLSTQIIKKVVF-------E 128 Clostridium per...
WP_015431539  75 fS---DARNVQv-VGCDFRNFAVPK-----------------------FPFKVVSNIPY-GITSDIFKILMF-------E 119 Pasteurellaceae
6IFS_A       144 HLPl-KGIVVMLQKEVAERMAADPSskEYGSLSIAVQFYTEAKTVMIVPKT----------------------------- 193 Bacillus subtil...
P07287       148 PTI--ETATMVTQLEFARKRTGDYG--RWSRLTVMTWPLFEWEFVEKVDRR----------------------------- 194 Saccharopolyspo...
Q5HNP6       118 SQA--KYSYLIVEKGFAKRLQN-----LQRALGLLLMVEMDIKMLKKVPPL----------------------------- 161 Staphylococcus ...
P41819       145 PRPp-RVSILMFQREFALRLLARPGdsLYCRLSANVQMWANVTHIMKVGKN----------------------------- 194 Saccharomyces c...
P14908       161 YRFgkVKMLLWMPSTTARKLLARPGmhSRSKCSVVREAFTDTKLIAISDANelkgfdsqcie-------ewdpilfsaae 233 Saccharomyces c...
P87250       164 QRFglVKMLVWIPQQTARKLFAPFSnkDRNRLTLLSELATNTKLVATSENSvkkflpdciek--------fdpviipsdn 235 Kluyveromyces l...
P37468       144 HLPl-KGIVVMLQKEVAERMAADPSskEYGSLSIAVQFYTEAKTVMIVPKT----------------------------- 193 Bacillus subtil...
P06992       129 YTDaiADMHFMLQKEVVNRLVAGPNskAYGRLSVMAQYYCNVIPVLEVPPS----------------------------- 179 Escherichia col...
P44749       134 YHDviQDMHFMLQKEVVKRLCAAPNskAYGRLTIMAQYFCQVMPVLEVPPS----------------------------- 184 Haemophilus inf...
Q9US51       181 GIFgrVRVLLWLPCSPTVTLLGSRGfsKRSKTSVFREAFTDSRVLAASESTlqklcmgyskeakenyqispnpllvsptp 260 Schizosaccharom...
1I4W_A       173 YRFgkVKMLLWMPSTTARKLLARPGmhSRSKCSVVREAFTDTKLIAISDANelkgfdsq-------------cieewdpi 239 baker's yeast
WP_015141733 129 SHA--SDIYLIVEEGFYKRTLD-----IHRTLGLLLHTQVSIQQLLKLPAE----------------------------- 172 Clostridium per...
WP_015431539 120 SLGnfLGGSIVLQLEPTQKLFSRk---LYNPYTVFYHTFFDLKLVYEVGPE----------------------------- 167 Pasteurellaceae
6IFS_A       194 VF-----VPQPNVDS---AVIRLILRDGPavDVENESFFFQLIKASFAQRRKTLLNNLVNNLPEGKAQKSTIE--QVLEE 263 Bacillus subtil...
P07287       195 LF-----KPVPKVDS---AIMRLRRRAEPllEGAALERYESMVELCFTGVGGNIQASLLRKYPRRRVEAALDHa-GVGGG 265 Saccharopolyspo...
Q5HNP6       162 YF-----HPKPSVDS---VLIVLERHQPl-iSKKDYKKYRSFVYKWVNREYRVLFTK------NQFRQALKH-----ANV 221 Staphylococcus ...
P41819       195 NF-----RPPPQVES---SVVRLEIKNPR--PQVDYNEWDGLLRIVFVRKNRTISAGFKSTTVMDILEKNYKt--FLAMN 262 Saccharomyces c...
P14908       234 I------WPT---KGkpiALVEMDPIDFDf----DVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQ-QYFNS---RITDK 296 Saccharomyces c...
P87250       236 K------SPD---DL---SLVEINPRDHSi----DLDHWDFVTQKLMILKSKPVEEMIE-ILGHGARDWFISR----LDP 294 Kluyveromyces l...
P37468       194 VF-----VPQPNVDS---AVIRLILRDGPavDVENESFFFQLIKASFAQRRKTLLNNLVNNLPEGKAQKSTIE--QVLEE 263 Bacillus subtil...
P06992       180 AF-----TPPPKVDS---AVVRLVPHATMphPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGM-----GIDPA 246 Escherichia col...
P44749       185 AF-----KPAPKVDS---AVVRLIPHKELphPVKDLYWLNRVCSQAFNQRRKTLRNALSTLFSPENLTAL-----GIDLN 251 Haemophilus inf...
Q9US51       261 IT-----SEPHKEDL---TLVEMCSKPQD--KQLSIPVFESIVRILLTCKATSLSKSIYYLGPGAETLLPSFTqcGINID 330 Schizosaccharom...
1I4W_A       240 LFsaaeiWPTKGKPI---ALVEMDPIDFDf----DVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQ-QYFNSR---ITDK 308 baker's yeast
WP_015141733 173 CF-----HPKPKVNS---VLIKLTRHTTDv-PDKYWKLYTYFVSKWVNREYRQLFTK------NQFHQAM-KHa-KVNNL 235 Clostridium per...
WP_015431539 168 SF-----LPPPTVKS---ALLNIKRKHLf-fDFKFKAKYLAFISCLLEKPDLSVKTALKSIFRKSQVRSISEKf-GLNLN 237 Pasteurellaceae
6IFS_A       264 TNIDGKRRGESLSIEEFAAL 283 Bacillus subtilis subsp. subtilis str. 168
P07287       266 AVVAYVRPEQWLRLFERLDQ 285 Saccharopolyspora erythraea NRRL 2338
Q5HNP6       222 TNINKLSKEQFLSIFNSYkl 241 Staphylococcus epidermidis RP62A
P41819       263 NEMVDDTKGSMHDVVKEKID 282 Saccharomyces cerevisiae S288C
P14908       297 DLLKKCPIDLTNDEFIYLTK 316 Saccharomyces cerevisiae S288C
P87250       295 VLLKKKPYELTYLEIDEIAK 314 Kluyveromyces lactis NRRL Y-1140
P37468       264 TNIDGKRRGESLSIEEFAAL 283 Bacillus subtilis subsp. subtilis str. 168
P06992       247 MRAENISVAQYCQMANYLAE 266 Escherichia coli K-12
P44749       252 ARAENLAIADYARLANWLAD 271 Haemophilus influenzae Rd KW20
Q9US51       331 MPVGLLSAADFLTISKIIQK 350 Schizosaccharomyces pombe 972h-
1I4W_A       309 DLLKKCPIDLTNDEFIYLTK 328 baker's yeast
WP_015141733 236 STVTYEQVLSIFNSYLLFNg 255 Clostridium perfringens
WP_015431539 238 AQIVCLSPSQWVNCFLEMle 257 Pasteurellaceae
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