Conserved Protein Domain Family
Glyco_hydro_28

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pfam00295: Glyco_hydro_28 (484237 is an unknown moldel)
Glycosyl hydrolases family 28
Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
Statistics
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PSSM-Id: 484237
Aligned: 10 rows
Threshold Bit Score: 322.042
Created: 21-Aug-2024
Updated: 4-Dec-2024
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
P26216        68 CGGTGKQTILIPKg-DFLVGQLNFTgp--ckGDVTIQVDGNLLAT----------TDLSQYKdhGNWIEILRVDNLVITG 134 Zea mays
A2R5S4        45 CSTITLNNIEVPA--GTTLDLTGLT------SGTKVIFEGTTTFQ----------YEEWAGP--LISMSGEHITVTGASG 104 Aspergillus nig...
A2QAH3        50 CSDVVLSSIEVPA--GETLDLSDAA------DGSTITFEGTTSFG----------YKEWKGP--LIRFGGKDLTVTMADG 109 Aspergillus nig...
Q2UHL4        49 csnIVLKNIAVPA--GETLDLSKAK------DGATITFEGTTTFG----------YKEWKGP--LIRFGGNKITVTQAAG 108 Aspergillus ory...
XP_007703784  45 CTDIVISGMTVPA--GTTLDLTGLK------SGTTVTFQGTTTFG----------YKEWAGP--LISVSGTNIKVVGAAG 104
P47180        43 CSSIVIKDLTVPA--GQTLDLTGLS------SGTTVTFEGTTTFQ----------YKEWSGP--LISISGSKISVVGASG 102 Saccharomyces c...
2_pfamImport   1 CTNIVLAGFQVPT--GKQLDLSKLK------AGTTVTFEGKTTFA----------TTADNDFd-PIVISGSGITITGASG 61 
Q6D880        62 CGQGKAVRLSAGSssVFLSGPLSLPsgasllIDKGVTLRAINNAKsfenspsscgVVDKNGKgcDAFITAVSTTNSGIYG 141 Pectobacterium ...
P05117       103 CSSRTPVQFVVPKnkNYLLKQITFSgp--crSSISVKIFGSLEAS----------SKISDYKdrRLWIAFDSVQNLVVGG 170 tomato
1_pfamImport   1 CQAPAPSQVLIPKg-DFKLGETVMTgp--ckSPIEFTLQGNVKAD----------GGSTQGK--DRWVVFEKINGFKLNG 65 
P26216       135 kGNLDGQGPa-------VWSKNSCTkk--yDCKILPNSLVMDFVN-NGEVSGVTLLNSKFFHMNMYrCKDMLIKDVTVTA 204 Zea mays
A2R5S4       105 -HLINCDGA--------RWWDGKGT-----SGKKKPKFFYAHGLD-SSSITGLNIKNTPLMAFSVQ-ANDITFTDVTINN 168 Aspergillus nig...
A2QAH3       110 -AVIDGDGS--------RWWDSKGTn----GGKTKPKFMYIHDVE-DSTFKGINIKNTPVQAISVQ-ATNVHLNDFTIDN 174 Aspergillus nig...
Q2UHL4       109 -AVIDGQGS--------RWWDGKGTn----GGKTKPKFIYAHKLQ-SSTIKGLHVKNSPVQVFSVQ-GNDVHLTDITIDN 173 Aspergillus ory...
XP_007703784 105 -HTIDCAGQ--------KWWDGKGSn----GGKTKPKFFYAHSLT-TSSISGLNVKNTPVQAFSINgATDLTLDHITIDN 170
P47180       103 -HTIDGQGA--------KWWDGLGd-----SGKVKPKFVKLALTG-TSKVTGLNIKNAPHQVFSINkCSDLTISDITIDI 167 Saccharomyces c...
2_pfamImport  62 -HVIDGNGQ--------AYWDGQGSnn--qDNPKPDHFIVVKKTTgNSKITNLNIQNWPVHCFDITgSSDLTISGLILDN 130
Q6D880       142 pGTIDGQGGvklqdkkvSWWELAADakvkkLKQNTPRLIQINKSK-NFTLYNVSLINSPNFHVVFSdGDGFTAWKTTIKT 220 Pectobacterium ...
P05117       171 gGTINGNGQ--------VWWPSSCKinkslPCRDAPTALTFWNCK-NLKVNNLKSKNAQQIHIKFEsCTNVVASNLMINA 241 tomato
1_pfamImport  66 gGTFDGEGNa-------AWKANNCHkt--fECKKLPISVRFDFVD-NAEIKDITSLDAKNFHFNVIsGKNMTFDNIKIIA 135
P26216       205 PGDS------------PNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTs-----KVNITGVTCGPGHGISIGSLGRYK 267 Zea mays
A2R5S4       169 ADGDtq--------ggHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGE------NIWFTGGTCIGGHGLSIGSVGDRS 234 Aspergillus nig...
A2QAH3       175 SDGDdn--------ggHNTDGFDISESTGVYISGATVKNQDDCIAINSGE------SISFTGGTCSGGHGLSIGSVGGRD 240 Aspergillus nig...
Q2UHL4       174 SDGDnn--------ggHNTDAFDVSESNGVYITGANVKNQDDCLAINSGE------NIEFTGATCSGGHGISIGSIGNRD 239 Aspergillus ory...
XP_007703784 171 SAGDsa--------ggHNTDAFDVGSSSGITISNANIKNQDDCVAINSGS------NIKVTNCQCSGGHGVSIGSVGGRK 236
P47180       168 RDGDsa--------ggHNTDGFDVGSSSNVLIQGCTVYNQDDCIAVNSGS------TIKFMNNYCYNGHGISVGSVGGRS 233 Saccharomyces c...
2_pfamImport 131 RAGDkpnaksgglpaaHNSDGFDISSSDHVTLDNNYVYNQDDCVAVTSGT------NIIVSNMYCSGGHGLSIGSVGGKS 204
Q6D880       221 PSTA------------RNTDGIDPMSSKNITIAYSNISTGDDNVAIKAYKgraetrNISILHNDFGTGHGMSIGSETMG- 287 Pectobacterium ...
P05117       242 SAKS------------PNTDGVHVSNTQYIQISDTIIGTGDDCISIVSGSq-----NVQATNITCGPGHGISIGSLGSGN 304 tomato
1_pfamImport 136 PAES------------PNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMk-----NLLIEKVVCGPGHGISVGSLGRYG 198
P26216       268 DeKDVTDINVKDCTLKKTMFGVRIKAYEdaASVLTVSKIHYENIKMEDSA-NPIFIDMKYCP-NKLCTANgASKVTVKDV 345 Zea mays
A2R5S4       235 N-NVVKNVTIEHSTVSNSENAVRIKTIS--GATGSVSEITYSNIVMSGISdYGVVIQQDYED-GKPTGKP-TNGVTIQDV 309 Aspergillus nig...
A2QAH3       241 D-NTVKNVTISDSTVSNSANGVRIKTIY--KETGDVSEITYSNIQLSGITdYGIVIEQDYEN-GSPTGTP-STGIPITDV 315 Aspergillus nig...
Q2UHL4       240 S-NTVKNVKVADSTVVDSDNGIRIKTIS--GATGSVSGVTYENITLKNIKkNGIVIEQDYKN-GGPTGKP-TTGVPITDL 314 Aspergillus ory...
XP_007703784 237 D-NTVKGVVVSGTTIANSDNGVRIKTIS--GATGSVSDITYENITLKNIAkYGIVIEQDYLN-GGPTGKP-TTGVPITGV 311
P47180       234 D-NTVNGFWAENNHVINSDNGLRIKTVE--GATGTVTNVNFISNKISGIKsYGIVIEGDYLN-SKTTGTA-TGGVPISNL 308 Saccharomyces c...
2_pfamImport 205 N-NVVDGVQFLNSQIVNSENGCRIKSNS--GTTGTINNVTYQNIALTNISkYGVDVQQDYLN-GGPTGKP-TNGVKISNI 279
Q6D880       288 ----VYNVTVDDLKMNGTTNGLRIKSDK--SAAGVVNGVRYSNVVMKNVA-KPIVIDTVYEK-KEGSNVP-----DWSDI 354 Pectobacterium ...
P05117       305 SeAYVSNVTVNEAKIIGAENGVRIKTWQ--GGSGQASNIKFLNVEMQDVK-YPIIIDQNYCDrVEPCIQQ-FSAVQVKNV 380 tomato
1_pfamImport 199 WeQDVTDINVKNCTLEGTDNGLRIKTWPsaACTTTAAGIHFEDIILNKVS-NPILIDQEYCP-WNQCNKNkPSTIKLVDI 276
P26216       346 TFKNITGTSST-PEAVSLLCTAKVpCTGVTMDDVNVEYsGtnnKTMAICTNAKgstkgclKELAC 409 Zea mays
A2R5S4       310 KLESVTGSVDSgATEIYLLCGSGS-CSDWTWDDVKVTG-G---KKSTACKNFP-------SVASC 362 Aspergillus niger CBS 513.88
A2QAH3       316 TVDGVTGTLEDdATQVYILCGDGS-CSDWTWSGVDLSG-G---KTSDKCENVP-------SGASC 368 Aspergillus niger CBS 513.88
Q2UHL4       315 TVNGVTGSVASkATPVYILCGKGS-CSDWTWKGVSISG-G---KKSDKCQNIP-------SGASC 367 Aspergillus oryzae RIB40
XP_007703784 312 TLKNVAGTVTSsGTEIYVLCGTGS-CSGWNWSGVSITG-G---KKSSSCLNVP-------AGASC 364
P47180       309 VMKDITGSVNStAKRVKILVKN---ATNWQWSGVSITG-G---SSYSGCSGIPs-----gSGASC 361 Saccharomyces cerevisiae S288C
2_pfamImport 280 KFTKVTGTVASsAQNWYILCGDGS-CSGFTFSGNAITG-G---GKTSSCNYPT-------NTC-- 330
Q6D880       355 TFKDVTSETKG---VVVLNGENAKkPIEVTMKNVKLTS-----DSTWQIKNVN-------VKk-- 402 Pectobacterium atrosepticum
P05117       381 VYENIKGTSAT-KVAIKFDCSTNFpCEGIIMENINLVGeSg-kPSEATCKNVHfnnaehvTPHCT 443 tomato
1_pfamImport 277 TFRNIRGTSGN-KDAVKLLCSKGHpCENVEIGDINIDYtGpdgPPTFECTNVTpk----lV---- 332
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