2KAN,3DBH,3M63,2ZEQ,5TL6,1OQY,1WH3,5JZE,2KLC,6J4I,2L7R,2KD0,5JP1,5YC2,5XQM,1V86,4A20,1WGD


Conserved Protein Domain Family
ubiquitin

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pfam00240: ubiquitin 
Click on image for an interactive view with Cn3D
Ubiquitin family
This family contains a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites.
Statistics
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Aligned: 79 rows
Threshold Bit Score: 54.9003
Threshold Setting Gi: 74962774
Created: 19-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2KAN_A  19 TVK---FPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELaDDYRNLNEYGITEFSEIVVFLKSI 89  thale cress
P55853  16 KIKvvgQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRI-NDDDTPKTLEMEDDDVIEVYQEQL 88  Caenorhabditis elegans
P63166  23 KLKvigQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQEQT 95  house mouse
Q12306  25 NLKv-sDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQI 96  Saccharomyces cerevisiae S288C
O13351  37 NLKvvgQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERI-RPDQTPAELDMEDGDQIEAVLEQL 109 Schizosaccharomyces pombe 9...
P55852  19 NLKvkgQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRL-RAEQTPDELDMEDGDEIDAMLHQT 91  thale cress
2ZEQ_A   6 FVRf--NSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKEL-PNHLTVQNCDLEQQSIVHIVQRPR 76  house mouse
6J4I_A  36 KVIg--QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRLLFEGQRI-ADNHTPKELGMEEEDVIEVYQEQt 106 human
5JP1_B  24 KVKg--QDGNEVFFRIKRSTQMRKLMNAYCDRQSVDMNSIAFLFDGRRL-RAEQTPDELEMEEGDEIDAMLHQT 94  tomato
5XQM_A  25 KVVg--QDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRI-NDDDTPKTLEMEDDDVIEVYQEQl 95  Caenorhabditis elegans
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