2KAN,3DBH,3M63,2ZEQ,3PHX,2DZI,1OQY,1WH3,5JZE,1J8C,2NBU,3KYD,2L7R,2KD0,5JP1,1V86,3UQB,4A20,1WGD


Conserved Protein Domain Family
ubiquitin

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pfam00240: ubiquitin 
Click on image for an interactive view with Cn3D
Ubiquitin family
This family contains a number of ubiquitin-like proteins: SUMO (smt3 homolog), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites.
Statistics
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PSSM-Id: 333953
View PSSM: pfam00240
Aligned: 81 rows
Threshold Bit Score: 53.3563
Threshold Setting Gi: 74962774
Created: 14-Mar-2017
Updated: 23-May-2017
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2KAN_A  19 TVK---FPSKQ-FTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELaDDYRNLNEYGITEFSEIVVFLKSI 89  thale cress
Q9WVS6   4 FVRf--NSSYG-FPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKEL-PNHLTVQNCDLEQQSIVHIVQRPR 74  house mouse
P55853  16 KIKvvgQDSNE-VHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRI-NDDDTPKTLEMEDDDVIEVYQEQL 88  Caenorhabditis elegans
P63166  23 KLKvigQDSSE-IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQEQT 95  house mouse
Q12306  25 NLKv-sDGSSE-IFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQI 96  Saccharomyces cerevisiae S...
O13351  37 NLKvvgQDNNE-VFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERI-RPDQTPAELDMEDGDQIEAVLEQL 109 Schizosaccharomyces pombe ...
P55852  19 NLKvkgQDGNE-VFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRL-RAEQTPDELDMEDGDEIDAMLHQT 91  thale cress
2ZEQ_A   6 FVRf--NSSYG-FPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKEL-PNHLTVQNCDLEQQSIVHIVQRPR 76  house mouse
3KYD_D  44 KVIg--QDSSE-IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKELGMEEEDVIEVYQEQC 114 human
3UQB_A  23 NLKv--SDGSSeIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQi 94 
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