Conserved Protein Domain Family
DNA_gyraseB

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pfam00204: DNA_gyraseB 
DNA gyrase B
This family represents the second domain of DNA gyrase B which has a ribosomal S5 domain 2-like fold. This family is structurally related to PF01119.
Statistics
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PSSM-Id: 333922
View PSSM: pfam00204
Aligned: 51 rows
Threshold Bit Score: 106.926
Threshold Setting Gi: 156848882
Created: 13-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8G4F7        322 GVKDFVDFLSKGepIsDIWriqgegtYKEetqAVGEGGELhA----------QEIertCGVDIALRWV-NGYDT-TIMSF 389  Bifidobacteri...
Q9KPD9        218 GLKDYLAEGVKG--Y-TLL-------PEE---PFTGEFTA------------QT----EAATWAVIWL-PEGGElITESY 267  Vibrio cholerae
Q2S2H3        221 GIQEYLDYLVED------------------------LQVSpIhddvf-mmedDDLdgdGRLEIALQWT--DAPKeQLHTF 273  Salinibacter ...
Q1D9H0        226 GIAEYLTKVVTE-------------------------RNKpLvpags-aafyHARdngVRLEAALAWT--EATDeHIRSY 277  Myxococcus xa...
XP_011389948  334 NFKQYVEMYVSA----INElggkadnGEEdaaGLPTSAAPkPaiiy---estVDKgrnWEVAFAV----S-DGEfRQVSF 401  Ustilago mayd...
BAF43524      337 NFKQYVEMYVSS--V-QEA-------AAE---KSGGAA---QpkqtviheqiSDR---WEIAYTL----STEGTfQHVSF 393  Coprinopsis c...
CAG04396      305 GFRSYVDLYVKD--KvDEM-------GN----ALNVVHEV-V----------NER---WEVCLTM----S-EKGfQQVSF 352  spotted green...
WP_011764849  226 GLAGYLKELAGD---------------------VEPVAPIfTaekya-gkddASFapgEGAAWALAWFeS---AvPSESY 280  Azoarcus
WP_041640753  220 GLSDFIREISKD---------------------SRLVVEDpFegrit-glgdAGKs---RVEWAILWD--EVDEsRLRSH 272  Magnetococcus...
WP_003512494  230 GIVDYIKEVSGD--------------------KAFTDIQYyEtstrg-rdreDKPeykLKMQIAFCFN-N---EvNLLEY 284  Clostridium t...
Q8G4F7        390 V-NIVETPGGGTHVDGFMNAITKQIRKAVEDNaRKLKVNmKdsaMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTA 468  Bifidobacteri...
Q9KPD9        268 V-NLIPTAQGGTHVNGLRQGLLDAMREFCEFR-NLLPRG-V----KLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSR 340  Vibrio cholerae
Q2S2H3        274 V-NGIPTEDGGTHEQGLKSGIRAVIRSFMDTH-DLVPHR-L----EIKGDDTREGLVGIVNLFHVDPQFQGQTKDKLNNP 346  Salinibacter ...
Q1D9H0        278 V-NGIPTPLGGTHEAGLRSAVVKAVRNYIETH-GIAPKG-V----TLTAEDIREGITAILSTYVVEPQFQGQTKGRLNNP 350  Myxococcus xa...
XP_011389948  402 V-NNIATIKGGKHVDHVADQVISRLIEHVKKD-KH---T-G----KVMPNQVRQQLWVFVNCQIVNPTFDGQTKETLTLK 471  Ustilago mayd...
BAF43524      394 A-NSIATSKGGTHVNYIADQISKALVTSISKK-NK---G-A----TVKPAQIRNHMWLFVKSLIVNPTFDSQTKELLTLP 463  Coprinopsis c...
CAG04396      353 V-NSIATTKGGRHVDYVADQVVSKLIEVVKKK-NK--AG-V----AVKPFQVKNHMWLFVNCLVENPTFDSQTKENMTLQ 423  spotted green...
WP_011764849  281 V-NLIPTVNGGTHESGLRAGVFEAVKSFIEHH-TLLPRG-V----KLQQEDVCGRMSFLLSARLLDPQFQGQVKEKLNSR 353  Azoarcus
WP_041640753  273 C-NTVPTPDGGVHEAGFRAALLRGMRDFADSR-NMMPKN-V----ALTGEDIMGGMMGVISLFIPDPQFSGQTKDKLTNG 345  Magnetococcus...
WP_003512494  285 YhNSSFLEYGGAPDKAVKNAFVYVIDKFLKSQ-GKYNKD-E---SRITFQDIQDSLILVSNSFSTITSYENQTKKSITNK 359  Clostridium t...
Q8G4F7        469 QVK--PIVTRLTDKQFGEMITGSKrgykEQSGRVLEKIVGEMHARIQSRKAKE 519  Bifidobacterium longum
Q9KPD9        341 QSA--AFVSGVVKDAFSLWLNEKP----QLAEQLAEVCIANAHSRMRASKkvv 387  Vibrio cholerae
Q2S2H3        347 SVR--SQVSGALRTELEQYLNDHS----STGEAIASRVVQAAKARRARRSASG 393  Salinibacter ruber DSM 13855
Q1D9H0        351 EVS--GQVDGVLRPALEKWLNDNK----SIAESVVARIVLAARAREASRAASQ 397  Myxococcus xanthus DK 1622
XP_011389948  472 QSAfgSKWT--LTDEFARKVIK-S----GVVDNIVSFARFKQDQAL-KKT-DG 515  Ustilago maydis 521
BAF43524      464 SSK--FGSKPTISDEFIKKVAK-S----GIVDNVLNWAKFKADQQM-KRadgt 508  Coprinopsis cinerea
CAG04396      424 QKSfgSTCP--LSDKFIKQATA-S----GIVESIMNWVKFKAQSQLNKKcsav 469  spotted green pufferfish
WP_011764849  354 EAV--KLVSTQLRDPFEIWLNNHV----EAGKAIAELSIKQALARQKNAQKVE 400  Azoarcus
WP_041640753  346 YVS--RMVESAIKDNLDHWLHGQP----ERATRLVGAMIERAQERINRR--KK 390  Magnetococcus marinus
WP_003512494  360 FIQ--EAMTEFLKEKLEVYFIENK----VECTKILEQVLVNKRSRETAEKTRV 406  Clostridium thermocellum
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