Conserved Protein Domain Family
zf-CCHC

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pfam00098: zf-CCHC 
Zinc knuckle
The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.
Statistics
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PSSM-Id: 306581
View PSSM: pfam00098
Aligned: 81 rows
Threshold Bit Score: 27.8689
Threshold Setting Gi: 50401851
Created: 13-Mar-2017
Updated: 23-May-2017
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10
                  ....*....|....*...
gi 731833     173 VFCYNCGNAGHFGDDCAE 190
gi 338819284  501 NTCFFCKQPGHWKADCPN 518
gi 51338772   242 MKCFNCKGEGHRSAECPE 259
gi 10720000   202 NTCFNCKKYGHRATECSA 219
gi 51338772   158 NNCFNCQQPGHRSSDCPE 175
gi 1730843     65 QRCFNCNQTGHISRECPE 82
gi 74758701   149 KKCHYCQSIMHMVANCPH 166
gi 74956990   311 PYCYKCKVVGHVSKDCPQ 328
gi 74627282    61 PKCNNCSQRGHLKKDCPH 78
gi 731833     112 IICTNCNANGHYKSQCPH 129
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