2KH9,2GO9,4N0T,5VSU,6ASO,2GHP


Conserved Protein Domain Family
RRM2_Prp24

?
cd12297: RRM2_Prp24 
Click on image for an interactive view with Cn3D
RNA recognition motif 2 in fungal pre-messenger RNA splicing protein 24 (Prp24) and similar proteins
This subfamily corresponds to the RRM2 of Prp24, also termed U4/U6 snRNA-associated-splicing factor PRP24 (U4/U6 snRNP), an RNA-binding protein with four well conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). It facilitates U6 RNA base-pairing with U4 RNA during spliceosome assembly. Prp24 specifically binds free U6 RNA primarily with RRMs 1 and 2 and facilitates pairing of U6 RNA bases with U4 RNA bases. Additionally, it may also be involved in dissociation of the U4/U6 complex during spliceosome activation.
Statistics
?
PSSM-Id: 409738
Aligned: 13 rows
Threshold Bit Score: 122.487
Created: 13-Sep-2011
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
RNA binding
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:
  • Structure:2KH9; yeast Prp24 RRM2 domain binds to a fragment of U6 RNA, contacts at 4A.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                 # #                           ###   #      # #                                 
2KH9_A                 4 CTLWMTNFPPsyTQRNIRDLLQDinvvALSIRLPSl-RFNTSRRFAYIDVTskEDARYCVEklngl------kiegYTLV 76   baker'...
Q9USY2               666 TNLYVTNFPPtyDELDITKLFSAyg-nVVDVRFPSl-RYNTNRRFCYVQMRkpDEAHNALQlhkkl------leekYPIQ 737  fissio...
EGN98450             693 STLYVTNFPEkfDDASVRDLFGQyg-vIFDVRWPSk-KFKSTRRFCYVQFTspSSAERALElhgre------lepdRTIN 764  Serpul...
998355               386 ITLYVTNFPPstDDESLHRLFGKss-nIFGIRWPSl-KYNAHRRFCYVSFRdaESAAKATGlhgkm------legkYKLS 457  Ophios...
NP_985142            108 CTLWVTNFPPryDGRELRRFFEDlgfqCLSVRLPSl-RYNAGRRFAYVDLPspQSADAAANtlngm------dldgYNLV 180  Ashbya...
EGV60824             614 CILWVCNFPPsmDKTKLIKVFEPyg-tVIDVRLPFqnSQHRQRRFAYIEYAegEQARAAVSqlngkmlhddlndstYKLV 692  Candid...
WGS:AABX:NCU09048.1  702 CTLFVTNYPPeaDEQSIRDLFKQcg-dIHSIRFPSl-KYNTKRRFCYVSFRdrSAAAAATQldgkp-----leggkYKLQ 774  Neuros...
CAG77686             561 TTVYVTNFAVddNEQTLREQFGAfg-eIASVRLPSl-SVHKHRRFCYIQFTtsAAAEAAVQfgk---------dndSGIV 629  Yarrow...
2GO9_A                81 CTLWMTNFPPsyTQRNIRDLLQDinvvALSIRLPSl-RFNTSRRFAYIDVTskEDARYCVEklngl------kiegYTLV 153  baker'...
4N0T_A                85 CTLWMTNFPPsyTQRNIRDLLQDinvvALSIRLPSl-RFNTSRRFAYIDVTskEDARYCVEklngl------kiegYTLV 157  Saccha...
5VSU_A               117 CTLWMTNFPPsyTQRNIRDLLQDinvvALSIRLPSl-RFNTSRRFAYIDVTskEDARYCVEklngl------kiegYTLV 189  Saccha...
6ASO_A                91 CTLWMTNFPPsyTQRNIRDLLQDinvvALSIRLPSl-RFNTSRRFAYIDVTskEDARYCVEklngl------kiegYTLV 163  baker'...
2GHP_A               118 CTLWXTNFPPsyTQRNIRDLLQDinvvALSIRLPSl-RFNTSRRFAYIDVTskEDARYCVEklngl------kiegYTLV 190  baker'...
Feature 1                   #  
2KH9_A                77 TKVSNP 82   baker's yeast
Q9USY2               738 VFISDP 743  fission yeast
EGN98450             765 VLISNP 770  Serpula lacrymans var. lacrymans S7.3
998355               458 VQYSDP 463  Ophiostoma ulmi
NP_985142            181 VKLSDP 186  Ashbya gossypii ATCC 10895
EGV60824             693 AKFSDN 698  Candida tenuis ATCC 10573
WGS:AABX:NCU09048.1  775 AKLSDP 780  Neurospora crassa OR74A
CAG77686             630 VEISDP 635  Yarrowia lipolytica CLIB122
2GO9_A               154 TKVSNP 159  baker's yeast
4N0T_A               158 TKVSNP 163  Saccharomyces cerevisiae S288C
5VSU_A               190 TKVSNP 195  Saccharomyces cerevisiae S288C
6ASO_A               164 TKVSNP 169  baker's yeast
2GHP_A               191 TKVSNP 196  baker's yeast

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap