Conserved Protein Domain Family
Sema_plexin_A1

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cd11271: Sema_plexin_A1 
The Sema domain, a protein interacting module, of Plexin A1
Plexin A1 is found in both the nervous and immune systems. Its external Sema domain is also shared by semaphorin proteins. In the nervous system, Plexin A1 mediates Sema3A axon guidance function by interacting with the Sema3A coreceptor neuropilin, resulting in actin depolarization and cell repulsion. In the immune system, Plexin A1 mediates Sema6D signaling by binding to the Sema6D-Trem2-DAP12 complex on immune cells and osteoclasts to promote Rac activation and DAP12 phosphorylation. In gene profiling experiments, Plexin A1 was identified as a CIITA (class II transactivator) regulated gene in primary dendritic cells (DCs). The Sema domain is located at the N-terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a ligand-recognition and -binding module.
Statistics
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PSSM-Id: 200532
Aligned: 7 rows
Threshold Bit Score: 1010.65
Created: 7-Apr-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative
Feature 1:putative Semaphorin binding site [polypeptide binding site]
Evidence:
  • Comment:Plexins function as receptors of semaphorins.
  • Comment:based on the binding of mouse Plexin A2 to semaphorin 6A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                 # ##                    
XP_002194409   33 KSPFRTFPVTDWSLTHLVVHNKTGEVYVGAVNRIYKLSNNLTlLRTHVTGPVEDNEKCYPPPSVQSCPHGLVTTNNVNKL 112  zebra finch
Q9UIW2         38 QPPFRTFSASDWGLTHLVVHEQTGEVYVGAVNRIYKLSGNLTlLRAHVTGPVEDNEKCYPPPSVQSCPHGLGSTDNVNKL 117  human
NP_001081382   31 PKDFRTFTGSDWSLTHLVVHNKTGEVYVGAINRIYKLSNNLTlLRTHVTGPVEDNEKCYPPPSVQSCPHGLITTNNVNKL 110  African clawe...
NP_001103480   35 LEPFRSFTPPDWGLTHLAIHNKTGDVYVGAVNWIYKLSSNLTkLRSHVTGPVVDNEKCYPPPSVQSCPHDLSPNSNVNKL 114  zebrafish
NP_001088457   31 PKGFRTFTGSDWSLTHLVVHNKTGEVYLGAINRIYKLSNNLTlLRTHVTGPVEDNEKCYPPPSVQSCPHGLFTTNNVNKL 110  African clawe...
NP_032907      36 QPAFRTFVASDWGLTHLVVHEQTGEVYVGAVNRIYKLSGNLTlLRAHVTGPVEDNEKCYPPPSVQSCPHGLGSTDNVNKL 115  house mouse
XP_414370      33 KSPFRTFSVADWSLTHLVVHNKTGEVYVGAVNRIYKLSNNLTlLRTHVTGPVEDNEKCYPPPSVQSCPHGLVTTNNVNKL 112  chicken
Feature 1                                               #                                      ###
XP_002194409  113 LLVDYSgNRLIACGSASQGICQFLRLDDLFKLGEPHHRKEHYLSSVnesgTMSGVIIEv--lNGQNKLFIGTPIDGKSEY 190  zebra finch
Q9UIW2        118 LLLDYAaNRLLACGSASQGICQFLRLDDLFKLGEPHHRKEHYLSSVqeagSMAGVLIAgppgQGQAKLFVGTPIDGKSEY 197  human
NP_001081382  111 LLIDYSdNRLIACGSASQGICQFLRLDDLFKLGEPHHRKEHYLSSVnesgTMSGVIIEv--pNGQNKLFVGTPIDGKSEY 188  African clawe...
NP_001103480  115 LLIDYPqNRLIACGSTSQGICQFLRLDDLFKLGEPHHRKEHYLSSVvesgTMSGVIISe---GHLSKLFIGTPIDGKSEY 191  zebrafish
NP_001088457  111 LLVDYAdNRLIACGSASQGICQFLRLDDLFKLGEPHHRKEHYLSSVnesgTMSGVIIEv--pNGQNKLFVGTPIDGKSEY 188  African clawe...
NP_032907     116 LLLDYAaNRLLACGSASQGICQFLRLDDLFKLGEPHHRKEHYLSSVreagSMAGVLIAgppgQGQAKLFVGTPIDGKSEY 195  house mouse
XP_414370     113 LLVDYSgNRLIACGSASQGICQFLRLDDLFKLGEPHHRKEHYLSSVnesgTMSGVIIEv--lNGQNKLFIGTPIDGKSEY 190  chicken
Feature 1                                  ###      ###                                           
XP_002194409  191 FPTLSSRKLMANEENAEMFgFVYQDEFVSSQLKIPSDTLSKFPTFDIYYIYSFSSEQFVYYLTLQLDTQltspDSTGEQF 270  zebra finch
Q9UIW2        198 FPTLSSRRLMANEEDADMFgFVYQDEFVSSQLKIPSDTLSKFPAFDIYYVYSFRSEQFVYYLTLQLDTQltspDAAGEHF 277  human
NP_001081382  189 FPTLSSRKLLGNEENAEMFgFVYQDEFVSSQLKIPSDTLSKFPTFDIYYVYSFSSEQFVYYLTLQLDTQltspDSTGEQF 268  African clawe...
NP_001103480  192 FPTLSSRKLMANEEDADMFsFVHQDEFVSSQLKIPSDTLSKFPAFDIYYIYSFSSEQFVYYLTLQLDTQltspDASGEQF 271  zebrafish
NP_001088457  189 FPTLSSRKLLANEENAEMFsFVYQDEFVSSQLKIPSDTLSKFPTFDIYYVYSFSSEQFVYYLTLQLDTQltspDSTGEQF 268  African clawe...
NP_032907     196 FPTLSSRRLMANEEDADMFgFVYQDEFVSSQLKIPSDTLSKFPAFDIYYVYSFRSEQFVYYLTLQLDTQltspDAAGEHF 275  house mouse
XP_414370     191 FPTLSSRKLMANEENAEMFgFVYQDEFVSSQLKIPSDTLSKFPTFDIYYIYSFSSEQFVYYLTLQLDTQltspDSTGEQF 270  chicken
Feature 1                                                                                         
XP_002194409  271 FTSKIVRLCVDDPKFYSYVEFPIGCvQDGIEYRLIQDAYLTKPGKALARYLGISEQEDILFTIFSQGQKNRVKPPKESVL 350  zebra finch
Q9UIW2        278 FTSKIVRLCVDDPKFYSYVEFPIGCeQAGVEYRLVQDAYLSRPGRALAHQLGLAEDEDVLFTVFAQGQKNRVKPPKESAL 357  human
NP_001081382  269 FTSKIVRLCVDDPKFYSYVEFPIGCmKDGVEYRLIQDAYLSKPGKRLAKELGISEREDILFTVFSQGQKNRIKPPKESVL 348  African clawe...
NP_001103480  272 FTSKIVRLCIDDPRFYSYVEFPIGCtKDGVEYRLIQDAYLSKPGRQLANSLGVSEQEDILFTVFSQGQKNRVKPPRESAL 351  zebrafish
NP_001088457  269 FTSKIVRLCVDDPKFYSYVEFPIGCmKDGVEYRLIQDAYLSKPGKRLAKELGISEREDILFTVFSQGQKNRIKPPKESVL 348  African clawe...
NP_032907     276 FTSKIVRLCVNDPKFYSYVEFPIGCeQAGVEYRLVQDAYLSRPGQALAKQLGLAEDEEVLFTVFAQGQKNRVKPPKESAL 355  house mouse
XP_414370     271 FTSKIVRLCVDDPKFYSYVEFPIGCvQDGIEYRLIQDAYLTKPGKALAKYLGISEREDILFTIFSQGQKNRVKPPKESVL 350  chicken
Feature 1                                       #  # #  #####         ## #                        
XP_002194409  351 CLFTLKKIKDKIKERIQSCYRGEGKLSLPWLLNKELGCINSPLQIDDNFCGQDFNQPLGGTVTIEGtplfgTPLFVDKED 430  zebra finch
Q9UIW2        358 CLFTLRAIKEKIKERIQSCYRGEGKLSLPWLLNKELGCINSPLQIDDDFCGQDFNQPLGGTVTIEG-----TPLFVDKDD 432  human
NP_001081382  349 CLFTLKKIKDKIKERIQSCYRGDGKLSLPWLLNKELGCINSPLQIDDNFCGQDFNQPLGGTVTIEG-----TPLFLDKED 423  African clawe...
NP_001103480  352 CLFTLTKIKEKIKERIQSCYRGEGRLSLPWLLNKELPCINSPLQIDDNFCGQDFNQPLGGTKTIEG-----TPLFIDKDD 426  zebrafish
NP_001088457  349 CLFTLKKIKDKIKERIQSCYRGDGKLSLPWLLNKELGCINSPLQIDDNFCGQDFNQPLGGTVTIEG-----TPLFLDKED 423  African clawe...
NP_032907     356 CLFTLRAIKEKIKERIQSCYRGEGKLSLPWLLNKELGCINSPLQIDDDFCGQDFNQPLGGTVTIEG-----TPLFVDKED 430  house mouse
XP_414370     351 CLFTLKKIKDKIKERIQSCYRGEGKLSLPWLLNKELGCINSPLQIDDNFCGQDFNQPLGGTVTIEG-----TPLFVDKED 425  chicken
Feature 1                                                                                         
XP_002194409  431 GMTSVAAYDYRGQTVVFAGTRSGKIKKILVDlpaerkHQALQYENVVAHEGSSILRDLVLSPDRQHIYAMTEKQVTRVPV 510  zebra finch
Q9UIW2        433 GLTAVAAYDYRGRTVVFAGTRSGRIRKILVDlsnpggRPALAYESVVAQEGSPILRDLVLSPNHQYLYAMTEKQVTRVPV 512  human
NP_001081382  424 GMTSVAAYDYRGHTVVFAGTRSGRVKKILVDlsasssHLVQQYENVVVHEGNAILRDLVLSPDRQYIYAMTEKQVTRVPV 503  African clawe...
NP_001103480  427 GMTSVAAYDYRGNTVVFAGTRNGRMKKILINsvs-psRPALLYESVAVSEGSPLLRDMLFSPDLQFIYTLTDKQVTRVPV 505  zebrafish
NP_001088457  424 GMTSVAAYDYRGHTVVFAGTRSGRMKKILVDlsasssYMAQQYENVVVHEGNAILRDLVLSPDRQYIYAMTEKQVTRVPV 503  African clawe...
NP_032907     431 GLTAVAAYDYQGRTVVFAGTRSGRIRKILVDlanpsgRPALAYESVVAQEGNPILRDLVLSPNRQYLYAMTEKQVTQVPV 510  house mouse
XP_414370     426 GMTSVAAYDYRGQTVVFAGTRSGRIKKILVDlpadrkHQVLQYENVVAHEGSSILRDLVLSPDRQHLYAMTEKQVTRVPV 505  chicken
Feature 1          
XP_002194409  511 E 511  zebra finch
Q9UIW2        513 E 513  human
NP_001081382  504 E 504  African clawed frog
NP_001103480  506 E 506  zebrafish
NP_001088457  504 E 504  African clawed frog
NP_032907     511 E 511  house mouse
XP_414370     506 E 506  chicken

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