Conserved Protein Domain Family
Csm6_III-A
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cd09742: Csm6_III-A 
CRISPR/Cas system-associated protein Csm6
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family
Links
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Statistics
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PSSM-Id: 187873
Aligned: 28 rows
Threshold Bit Score: 146.265
Created: 23-Nov-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Q8ZZR0        24 LIDASLAVLSped-----------prqGVFNSLSPDPFVkf-----------avEEPERCCAELNTVVKAARRwdrl-fs 80  Pyrobaculum aer...
Q1AZE3        39 EDELTPEEREr----------------LDRHIEERWQLLvda----------slEQVKRMSAELNGLINYYGGnltprpg 92  Rubrobacter xyl...
Q6ZED6        34 EAEISSEDKAq----------------IDRHYQQRSQELnee----------diEGAKKLSAELNGILTYSKGqi----s 83  Synechocystis s...
ZP_01622191   34 AANYTVEEME-----------------YYPDVQDILETLkqrvedklynentedDKIREISAELNGIYGIYEYtek---s 93  Lyngbya sp. PCC...
ZP_03725248   22 LRKLLTEHANaktp----------eelPEAERTRIMEHLgklkty---vatlsiKDAKKASAELNGILTFYDSqpa--ah 86  Opitutaceae bac...
ABV27263      24 KKGLSNDGIKpeyrp-------laeayQRGDWPGVAKALrp-----------lpASDRVCGAEINSIASLVEKeyi---p 82  Candidatus Chlo...
ZP_01872300   29 YSNMSENDIDkef-----------kskFDIEFEKLKESLssk----------nnEELKRLSAEINALFHFYKNgf----l 83  Caminibacter me...
YP_001306885  16 LQKIGLKEAF-----------------ENGEIDKITKSLleie--------gnpENLREFGAEINSIVSIIKKgyl---t 67  Thermosipho mel...
YP_002509255  19 EEEIGKSEYDyfldnkddvdkvyydrkGKDKIHRLKKVAlnylsk---kdinnnEDLNNMSAELKSIKKIIEYkn----i 91  Halothermothrix...
ZP_01621557   14 AKKLGVKPAElln-----------wvdGQNSMEDAVESLfstfrd---lvpedqNLKSSLSAEIHSLFRIGITn------ 73  Lyngbya sp. PCC...

Q8ZZR0        81 gDVKAVYYSSDTAQGKFVASVLERSLCRVLRArqcva-----gvkvaEGLGRDFYGGLLKLAHLVKTDvye-arrEGRLP 154 Pyrobaculum aer...
Q1AZE3        93 rPDEHILLTSDTYLGRRVGDVLKEWLEERGFNvqvwc-----pgglaTKSREDFRRAMAELIRRCEGAlpf-rrdAGYHV 166 Rubrobacter xyl...
Q6ZED6        84 tSDHYYLIATDTYVGGLTATLVTDWIQSHQGNaflti-----irdlsTKEIETFRLAMSEIVRWCDYElnnqypqPAWKR 158 Synechocystis s...
ZP_01622191   94 qQDQHWLIATDTAQGEIAANIVQSFLESKGMRvqvya-----pdnlsTRSTEKFKDGIDELLKWADQTllv-qkkSGDEI 167 Lyngbya sp. PCC...
ZP_03725248   87 kTDTHYLLATDTWLGERSAELVKTWLLKNDFSavttrr----hkdlqTSDWKYFQSALSDLVKWLADEiap-qrnPSTKV 161 Opitutaceae bac...
ABV27263      83 aDCGLFFLHSSTDKGRDIAAILKDYYLDKGHApvetve---vedlqdEDPKRFRTKGLRNLARSVCCIvr---erSAAAC 156 Candidatus Chlo...
ZP_01872300   84 sKDFHKLLITDTYLGKKSAEIVEEVLKLKGISnisiys----pqdlkTSDIESFHLSLSEIVKDLSEEleg-yksSGYKV 158 Caminibacter me...
YP_001306885  68 eRKNLYFLVSDTDEGKKIGEILKGYFENIKNFnfekvtvcvieklndARPYDFKIHGLRNLIKKIAEFvr----kHYGEV 143 Thermosipho mel...
YP_002509255  92 kQYEIIFICSDTLAGKVVTDILMDYIIESKFNytdiktk-likklqvQNKARFEKSGVHNLIEYINTMvn---ntGSNNL 167 Halothermothrix...
ZP_01621557   74 -EDQIVLLSSNTNDGYCCALAVKKYLEYYWKGigvlvek--ipglqvYDAELFRKTGVVEFVKFILKQve---kyDASNI 147 Lyngbya sp. PCC...

Q8ZZR0       155 YIVATGGYKPESTFAVIAAYIAGalgVFYIHESFNDVVMLPMVPLQLREELRRF 208 Pyrobaculum aerophilum
Q1AZE3       167 AFNLTGGFKSVQGFMQVVGMFYAd-eMFYIFETGSSLITIPRLPIRLETEAIVR 219 Rubrobacter xylanophilus DSM 9941
Q6ZED6       159 IFNLTGGFKSVNGFLQALAMFYAd-eSIYIFESDGQLLTIPKLPIKLSPEDDLA 211 Synechocystis sp. PCC 6803
ZP_01622191  168 RFNLVGGFKALQGYLNTIGMFYAd-eIIYIFEGNSELVKIPRLPIEFKKSVIKP 220 Lyngbya sp. PCC 8106
ZP_03725248  162 IFNLSGGFKSETGFLQALGMFYAd-eTIYLFERSSELMRIPRLPVRMDDEKSVC 214 Opitutaceae bacterium TAV2
ABV27263     157 AINATGGYKAQIAVAVLLGQALGi-pVFYKHELFSEIIAFPPLPVAFDFEVWMR 209 Candidatus Chloracidobacterium thermophilum
ZP_01872300  159 IFNLTGGFKSVNSFMQSMASLWAd-eTIYIFESSKELLTIPRLPLKVDEDIFKE 211 Caminibacter mediatlanticus TB-2
YP_001306885 144 IINATGGYKAQIAFALALGQTLKv-pVYYRFERFPEVIELEPLPLDLDKNYYFL 196 Thermosipho melanesiensis BI429
YP_002509255 168 ILNITGGYKSVVPYMTIMGYVNEi-pVYYIFEETNELIELPLIPIKVDEELFKK 220 Halothermothrix orenii H 168
ZP_01621557  148 ILNPTGGYKALVPYTVLLGMLKGi-kCDYIFEQSTALLELPPLPLEFKRAQFEA 200 Lyngbya sp. PCC 8106
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