Conserved Protein Domain Family
Cse2_I-E

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cd09670: Cse2_I-E 
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CRISPR/Cas system-associated protein Cse2
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;
Statistics
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PSSM-Id: 187801
View PSSM: cd09670
Aligned: 16 rows
Threshold Bit Score: 95.2127
Threshold Setting Gi: 15803276
Created: 5-Feb-2010
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2ZCA_A         6 RFLDWLKRLqgq----------kawTAARAAFRRSLafppgaypraxPYVEPFLAKgdwr--------qeeREAHYLVAA 67
gi 36784173    8 ILLHWWQSMfmspkqlkekgiipapSTYRAQLKRCDsvem----amlTEGFRALWLslpdeislsdnpiklEYWATMAVA 83
gi 2829646     9 ALYRAWQQLd---------------NGSCAQIRRVSepde---lrdiPAFYRLVQPfgwen------prhqQALLRMVFC 64
gi 39983369    9 GLYQAWERLa---------------PGPRAELRRVErpdd---llevPAFYRLFSGrgtt-------ewekGAYQRLIFC 63
gi 46911627    4 QIYQAYCRLp---------------KGDQADLKRCNlskl----adsSAYFRVLKFsgtnd-----nkqtqRILYLMVAI 59
gi 21648000   17 EFVIGLCQRd---------------KGAAAALRRADn----------PATEYQSWEylagfni-dlekpfeRIPYAAIAA 70
gi 38201015   13 FLHEVLCRReek-----------eyRQNRANLRRGAdttte--vyafPYVYPQLPQeat----------tqERLVLMRVA 69
gi 16761714   27 TLSERYERKdgkr---------vngRAWRAELKRMAppyg----vmiCEGHDALRQallkhmr--lqpldeMALALFVSV 91
gi 254391772  12 RYWHRHVGAdgawrke---htggppGEDLAALRAGLgk--------pAGTVPSLWQhytsrtd--grptpeLEAEHGALS 78
gi 29611208   20 AYTCWIEQIcr------------ddPGARTALRSGLrrtl----ddvPRMHRFVAPwlphdr---qapeseQRAYYAVAA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2ZCA_A        68 LYALKdgdh-----------------------qvgRTLARALWEKaqgs-----------asvEKRFLALLEADrd---- 109
gi 36784173   84 LVHVKnn--------------------------sdIKLAVAAGKKgggnk---------pvvsELRFSQLQNAKtp---- 124
gi 2829646    65 LSAGKnvirhqdk---------------kseqttgISLGRALANSgr--------------inERRIFQLIRADrt---- 111
gi 39983369   64 LPCIKhsg-------------------------enISLGRALAKGrg--------------vgEKRLFQVVRSSep---- 100
gi 46911627   60 DLTQEed---------------------------gSSVAIALLKAgv---------------nENQIQQIIRSGdn---- 93
gi 21648000   71 AIARAkaern---------------------gsagIGKAIAFCYEdrsk----------sdqaKARLRRLLACNsv---- 115
gi 38201015   70 ALAAEfgnipav-----------------gsdtpaKSLGRWAYEVs-----------------RQRMLDRQQQVafnpkk 115
gi 16761714   92 AVHIKshk-------------------------enISFAAQLGEKlkgst---------scvsGLRFERLQKAS------ 131
gi 254391772  79 LYGLHqqsrrr------------------pmhrpgVGLGEALRRLrqsggv-------sadalDRRTAAAVNATsv---- 129
gi 29611208   81 MIAAQprtthtspeaaleadgasqspqpapappygTSLGLAFALAvtaspgreremrestaesRLNLLTRQSANg----- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2ZCA_A       110 -------------qIAFRLRQAVALVeg---------gIDFARLLDDLLRWfs--------------peRHVQARWAREY 153
gi 36784173  125 ------------neLLRRLCRVLQQIkg---------nISVLALARDIEEWfaeyeql-----rpckadRRIKVRWGMDY 178
gi 2829646   112 -------------aDMVQLRRLLTHAep---------vLDWPLMARMLTWWg-----------------KRERQQLLEDF 152
gi 39983369  101 -------------nDMIQLRRILRMAep---------tVNWDLAARQLWYWn-----------------DRSKRDLLEDY 141
gi 46911627   94 -------------gIEYLKRQLVRCKn-----------IQLKSLGKLAQYWg-----------------ENTRRQLLKEY 132
gi 21648000  116 ------------eeACRILRPLFSLIdska-----avtLDYAELLSQLLWFnd--------------dsNRIKTDWATDF 164
gi 38201015  116 ldvvgerlaylhtqDFEEAVRAVSRLmsiasslsnvpaFDYIALYSLFSYWgngi----------seksQRVRMRVLQDY 185
gi 16761714  132 --------------DPETFCQLLIQAvkir----gtegVNVLSLADGIFLWmeewqrrenhqpefrnpfERSRIRWANEY 193
gi 254391772 130 ------------paLLYRLRGLIPQLrsa------aipLDYDQLLRDLRNWahp------------esrQRVRRTWGLAY 179
gi 29611208  156 --------------LHRHLPAAVGYLrel------gvpIDWAQLLADLIAWpl--------------hsGRISRRWLQDY 201

                 ...
2ZCA_A       154 YGA 156
gi 36784173  179 YRA 181
gi 2829646   153 VLT 155
gi 39983369  142 FLN 144
gi 46911627  133 ILA 135
gi 21648000  165 YRH 167
gi 38201015  186 YGS 188
gi 16761714  194 LST 196
gi 254391772 180 HTD 182
gi 29611208  202 YRQ 204
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