2I71


Conserved Protein Domain Family
Csx1_III-U

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cd09660: Csx1_III-U 
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CRISPR/Cas system-associated protein Csx1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as MJ1666 family
Statistics
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PSSM-Id: 187791
Aligned: 10 rows
Threshold Bit Score: 281.593
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2I71_A     23 ASIVFSTIGNPKGYQKVTYEIDG----------EKFESNVSVLALRDLLKVDK------TVVILGISVADVYNCKYady- 85  Sulfolobus solfata...
NP_142169   1 MRVLISPWGDFRKWKVAKYTFSG----------KSLESRSTLPIMVDVIRPQE------TIIIVPDTLSSDFSSQEsmw- 63  Pyrococcus horikos...
NP_558390   2 KFLVVAPWGNPSMWRRARYRIELrhkaleglgeGEVETCSSTKALAELLRRRGdv---kVLIFGLDTVAQPAGGRTpr-- 76  Pyrobaculum aeroph...
NP_213260   2 KKVVIAPWGDPTNWQRVKYSYND----------HEDKYPSATGIIIKAEKPDS------VILVCPDSLAEKRIPYKeiki 65  Aquifex aeolicus VF5
NP_578856   3 MRVLVTTWGNPFQWEPITYEYRG----------IKVKSRNTLPILVKTLEPER------ILILVADTMANYYDSGKnkpe 66  Pyrococcus furiosu...
NP_248676   2 QKILIAPWGNFSSWKKVIYSFNG----------VEKESKSSLSAIYDKINPDK------VYILVLDTLSNLESENYgdi- 64  Methanocaldococcus...
NP_342836   2 ASIVFSTIGNPKGYQKVTYEIDG----------EKFESNVSVLALRDLLKVDK------TVVILGISVADVYNCKYady- 64  Sulfolobus solfata...
NP_624152   1 MKVIYQIGRFDKGFMKTQEFTFRq---------EKYTEVLTSFVMKKFFQKKNpqeksmVVLIFPVSLILNESAIKevie 71  Thermoanaerobacter...
NP_110633   2 KSIFISLWGNPERWNVTRYSFNS----------KTCESITSSRVIYENFKTDY------CIIYIPNSIYPGIYKDDtyls 65  Thermoplasma volca...
BAB59418    4 MKILFAPIGDPKNYDEVKYRIDG----------KDYPSNASFKVIKEALNMDE------TIVYAGLSLCTNSNYNDyvsc 67  Thermoplasma volca...
2I71_A     86 ---------------------rsCKECIIQNSKNdlg------------isESYVVAPNVYQ-----------KFKGKpd 121 Sulfolobus solfata...
NP_142169  64 ---------------------nsVKDEVKEFTNQlg-------------veDVKIIVVPGSGsfs------ngSFFGNpm 103 Pyrococcus horikos...
NP_558390  77 ---------------------eiAEEKYREWARAlg--------------vEGEVVSLPGIGlfh------gwRYEGKpl 115 Pyrobaculum aeroph...
NP_213260  66 qcsgnlsdk--tqgnlpfenyeeIKSKVENKIKDffskn-------infhkKPDVIISYSFGsyn------tlEFEGQae 130 Aquifex aeolicus VF5
NP_578856  67 ieeksfssysevvedtkerilwhIKEEVIEELREedpelakk-ienmlkdeRITIEVLPGVGvfg------niTVEGEml 139 Pyrococcus furiosu...
NP_248676  65 --------------------vkeVKEKTENFIKEnln------------idNYEVIVCPGVGtfynkdfekyfKFYGNlt 112 Methanocaldococcus...
NP_342836  65 ---------------------rsCKECIIQNSKNdl-------------giSESYVVAPNVYq----------KFKGKpd 100 Sulfolobus solfata...
NP_624152  72 sndeai--------ekfkeklerFKDMVPNTLQEystdpyafysfhphckiADDFFVIHSLGgykif--geyiEFNSDyn 141 Thermoanaerobacter...
NP_110633  66 q------------------yqdlINSKLCEFLNSkdtes-------aefykNSNKIIFPSKGsftadnknyifDFDINy- 119 Thermoplasma volca...
BAB59418   68 --------------------snyISNLVKDKLQLn----------------DESVIVAPNIYgdk------ftQPDGKnt 105 Thermoplasma volca...
2I71_A    122 ----hYFTYIYYHSLRILEKEg--iNEVFIDTTHGIN-YXGVLAKEAIQLAVSAYAak---seKEVKVSLYNSDPVgkd- 190 Sulfolobus solfata...
NP_142169 104 ----dAYMFLLYELAKELPLEi---KEVHLDVTHGLN-YLTFFTVRVVQELLGILSi-----rKGVVLKTYSSDPFvdg- 169 Pyrococcus horikos...
NP_558390 116 ----hLFNAAFYHILKTAEELk--pSFIVVDLTHGVN-YQTIAVLYAAVAASVLLE-------KEDRLLLYNSEPYpae- 180 Pyrobaculum aeroph...
NP_213260 131 dffagVLKGLVYKFTEYLEKGipekIEIILDVSHGIN-YTTVMTYEAVRTLAQLLAy-----fTEVSLKVLNADPVigr- 203 Aquifex aeolicus VF5
NP_578856 140 ----dFYYYATYKLAEWLPVQn--nLEVYLDLTHGIN-FMPTFTYRALRNLLGLLAy-----lYNVKFEIVNSEPYplgv 207 Pyrococcus furiosu...
NP_248676 113 ----dYYSFALYELSKRLDGD----LEVHLDLTHGLN-YMPVLTYRVIKDLLEILAi-----kNKVRLVVYNSDPYvgr- 177 Methanocaldococcus...
NP_342836 101 ----hYFTYIYYHSLRILEKEg--iNEVFIDTTHGIN-YMGVLAKEAIQLAVSAYAak---seKEVKVSLYNSDPVgkd- 169 Sulfolobus solfata...
NP_624152 142 divlqIFSDMAIRYLNEYNRDne-tMEFYIDISSGHNiYISALLEAARYFSVFSGLlnwlkkeKRPKIFLAFSDPIlpgt 220 Thermoanaerobacter...
NP_110633 120 -----IYSYFYRSILNYLESVdk-iNKIIVDITHGIN-FLEFIFLESLMYALRVYAls---nkIDVNIEYYNSDPYsn-- 187 Thermoplasma volca...
BAB59418  106 ----lYFDFIYYNTLKILENEk--pDEIYIDITHGIN-YMPLLATDAIRLATYTYLlg----rNSIDLAIFNSEPVikgy 174 Thermoplasma volca...
2I71_A    191 ---------vsDTVKLHEIEAIKISP--------------------LSGLKYVTYQILNkdk------------------ 223 Sulfolobus solfata...
NP_142169 170 ---------svRHLRVNLIEEATIDP--------------------KPLSEFLEGKFLVnysmdrvefgeia---rrlka 217 Pyrococcus horikos...
NP_558390 181 ---------ysAETCIKEAQRVERREg-------------------VPQLTALDVRQLQdavgairllwalrrlaplkid 232 Pyrobaculum aeroph...
NP_213260 204 --------niqKPLRINEIEYYSSIFpnlvvyri-----kkedkecEQILEAYDDSINEigdnm---------------- 254 Aquifex aeolicus VF5
NP_578856 208 sq----eiredTILHIREIGEGVVRP--------------------RPQYSPVEGKLYW--------------------- 242 Pyrococcus furiosu...
NP_248676 178 ---------ekEILNIHTVEDVIIKPsydikg---------mtldfLDATKFVDKKEIGkikkeinmnpk-------ike 232 Methanocaldococcus...
NP_342836 170 ---------vsDTVKLHEIEAIKISP--------------------LSGLKYVTYQILNkdk------------------ 202 Sulfolobus solfata...
NP_624152 221 t------gmkeYEIHIEELRFKTFFSspigeeeldnfnlarriagkEKELKNVLQKLFEn-------------------- 274 Thermoanaerobacter...
NP_110633 188 ----------fAILNIYKIKSIEIEY--------------------KNVLSIISRDFINmyrhnkkdi------------ 225 Thermoplasma volca...
BAB59418  175 sgpynianvysERLYVRQALLSVLMPfl-----------------sNENKNNITNKVLKgi------------------- 218 Thermoplasma volca...
2I71_A    224 -----nffNKIFSDSVNAIPRFATALDNg---------lFIYLSEkd----------ssLHLKRLEDDLSkd------pL 273 Sulfolobus solfata...
NP_142169 218 keldlgriNSWIASLKHGLPLVFTTMYPqe--------gEVEGVLe-------------DVVAKFLEGFNvg-----egK 271 Pyrococcus horikos...
NP_558390 233 veiqspelRRRFDKVITSYRLLASGAAAllfpkakfsgrAPEFYVpgegpgavpepridIKVDPDRRVVSy-------gE 305 Pyrobaculum aeroph...
NP_213260 255 ---klereHIFLSAIIHGTPLYILTYMPss--------kDLKAKIdnaag----yyeknIIIENEIGEKKi--------K 311 Aquifex aeolicus VF5
NP_578856 243 --------NAFISSVANGFPLVFASFYPni--------rDVEDYLn-------------KKLEEFLVGIEvgeredgkpY 293 Pyrococcus furiosu...
NP_248676 233 lrimkqniNAFIASIVYALPLVYSTFFVkk--------dKIEIYLn-------------ELIGAFISNIKinp----edK 287 Methanocaldococcus...
NP_342836 203 -----nffNKIFSDSVNAIPRFATALDN-----------GLFIYLsek--------dssLHLKRLEDDLSkd------pL 252 Sulfolobus solfata...
NP_624152 275 -------fLICFSAIKNNTPLVLYHFNFda-------weDVISFLk-------------DFLEMLKRKLSg--------T 319 Thermoanaerobacter...
NP_110633 226 kdyfklnfNEDLSDYIKACSIMAQSVTV-----------PYLMYLi-------------INIYKKIYEIGsggl-evhlN 280 Thermoplasma volca...
BAB59418  219 -------nNCNSDLIYSNANALFSGIFPfvll----srrEIEQCI--------------KSVERKIKILDynn---fgiE 270 Thermoplasma volca...
2I71_A    274 LTPSe-nEINVVYk-----DXKYALSHALFYVISRf--------------SGNVDLDTLRHYAETYADk----------- 322 Sulfolobus solfata...
NP_142169 272 VVRSi--SLGKDFg-----SLAKLYFQLRVLKDLKemy---------nlpKDEASVEELLKISEEIFTgri--------- 326 Pyrococcus horikos...
NP_558390 306 ADEMysvAVALHYleraldELRAEDLVSFLNRVAKhykeigvtltsivvdTTAKQLGRMVKAAEALADkgvlkrid---g 382 Pyrobaculum aeroph...
NP_213260 312 VKRKl--RFTENYi-----TMLKAYFLSFILEKKGfs------------kKEEVLLEDINKLNEMIFRef---------- 362 Aquifex aeolicus VF5
NP_578856 294 VKREk--ALDRSFk-----NASKLYYALRVFNTKFqn-----------ypKKEVPIEEIMEISKIFESlprigiilerqv 355 Pyrococcus furiosu...
NP_248676 288 ILKRy-lYFGEGFn-----SLVKAYFASKISEIPQl-------------iKDELSLEEIDELKNTLFKe----------- 337 Methanocaldococcus...
NP_342836 253 LTPSe-nEINVVYk-----DMKYALSHALFYVISRf--------------SGNVDLDTLRHYAETYADk----------- 301 Sulfolobus solfata...
NP_624152 320 WESSp-vLFKSDYl----nTILSLGFYAGILEVLEtkgis------kydyENGIALEEIKQLFASEENsiykl------- 381 Thermoanaerobacter...
NP_110633 281 IEDN---KIRQTFdnkinvNIETLAFLDTLIKINSsi-----------kyDNGFKIPDIYTFTDNFFSr----------- 335 Thermoplasma volca...
BAB59418  271 FNTShkpVYKDTM------PIELSYLHSLLYIIEKiign--------mpdSSCVKISDIKDLAKRFSTs----------- 325 Thermoplasma volca...
2I71_A    323 -------VTRAIIENEVDKIEKyqxgserkllge------------------------------yxkvegkgfdkRILYA 365 Sulfolobus solfata...
NP_142169 327 -----khSTKVELDNVANRVEKtegwvklsef---------------------------------fknanpqvdpRNFFA 368 Pyrococcus horikos...
NP_558390 383 vielsqlEAMVLFERSNRALELaaswrqaldefakv-------------------------lsgemerkisdrtlRNLLA 437 Pyrobaculum aeroph...
NP_213260 363 ------pVLKHRISKETNNINErrdnipedfliyr----------------------------einrrgnrdfeeRNFFA 408 Aquifex aeolicus VF5
NP_578856 356 ewlrnlvYGRLWYENGEQKIKKglleiikdkkdkrkeaealkkgktislaeaakltrifspsgerietiespnvvRNFIA 435 Pyrococcus furiosu...
NP_248676 338 ------nPNSQYIKNEISSLYNiintkykeeelseilgn-------------------wtpiykirrenidkfkiRNFLA 392 Methanocaldococcus...
NP_342836 302 -------VTRAIIENEVDKIEKyqmgserkllge------------------------------ymkvegkgfdkRILYA 344 Sulfolobus solfata...
NP_624152 382 ---fgleTHIPILGREVHNLCHggkkkeksilnqateew-------------------skvynfidegksssfenRNFLA 439 Thermoanaerobacter...
NP_110633 336 ------eSYNIFIKNELRKIKSkkehydf----------------------------------------dignfsRNFKA 369 Thermoplasma volca...
BAB59418  326 ------eTISKLVESEIDSIEKlqnisdkpqllavik------------------------hsqsspksicqadkRNLLA 375 Thermoplasma volca...
2I71_A    366 HGGLPYAg--TYVYKEKd--------KVYVTYgd-------kIDEIER 396 Sulfolobus solfataricus
NP_142169 369 HAGLEANl--VEVKRNG---------ELYLRYtkgkvrwggkEEKAEK 405 Pyrococcus horikoshii OT3
NP_558390 438 HGGYSHVaveKVVIKDKk--------IVEVVYnge-----ivSELVQR 472 Pyrobaculum aerophilum str. IM2
NP_213260 409 HAGFEYNs--VMLKKDDk--------DIILKVne------qnKEKIEN 440 Aquifex aeolicus VF5
NP_578856 436 HSGFEYNi--VYVKYDRls------dRLYFFYk--------dKEKAAN 467 Pyrococcus furiosus DSM 3638
NP_248676 393 HAGFEKSvteIYISVENkngkielseKTSLRYn---------KNYIEE 431 Methanocaldococcus jannaschii DSM 2661
NP_342836 345 HGGLPYAg--TYVYKEKd--------KVYVTYgd-------kIDEIER 375 Sulfolobus solfataricus P2
NP_624152 440 HSGFERNv--TEVRKEEg--------KLYLRYdk------sfEKKILK 471 Thermoanaerobacter tengcongensis MB4
NP_110633 370 YAGLLDG---LYVLKDN---------SIDFKTfh------fqNQKIDL 399 Thermoplasma volcanium GSS1
BAB59418  376 HGGFEQNv--VYLWRENg--------EICVNYcd-------cIENVRN 406 Thermoplasma volcanium GSS1
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