Conserved Protein Domain Family
CasRa_I-A
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cd09655: CasRa_I-A 
CRISPR/Cas system-associated transcriptional regulator CasRa
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Predicted transcriptional regulator of CRISPR/Cas system
Links
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Statistics
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PSSM-Id: 187786
Aligned: 9 rows
Threshold Bit Score: 157.156
Created: 5-Feb-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
CAB49931    3 AVFPVGFDEKFIIRALMR--NQTKEg--dRLLAVVpn---dyKKEERTVNALRAIKDIAipligEGNFKIIELPTt---- 71  Pyrococcus abyssi GE5
Q57824      7 YIATFGYHTNHIFDKNGKi-IGIDDekisNMILIYsl---dvDADENTVNSIKNTKNYI-----ESKLKEYNIPYlfv-e 76  Methanocaldococcus...
NP_377551   7 LVFGVGFTAEYIIRAITE--RGIKDv---LDVAIFsvtseeeFRKRQAQETMDSILKYLsaigiSGHPKYISIKEpf--d 79  Sulfolobus tokodai...
NP_070694   5 LIATLGFDEKFCYRAILR--HGIKEg--dRVILITtq---mvERVAKAYEWIRKLLETSygdrvEVEVLQVELKSve--- 74  Archaeoglobus fulg...
NP_378642   4 YIFTVGIHEDFAVRRLVStnVGRDDv---IVVLVKsp---itGGNRRAINGLSAVMSKMgl--rDAVVKEIEVKDif--- 72  Sulfolobus tokodai...
NP_275660   3 IMDTTLISTIYSIEPVMFciTQFSPr---KVVLLKe------DKAPREKEQVEQVLRDTlgnfvEITTFETSLYDvv--- 70  Methanothermobacte...
NP_147813  11 ILATVGFNYSRPWRAVAS--IGLEPg---SLVIIVnse-prtREAVDAVEKLKNMIIDAyg-dlHVETRDVWLDPsngip 83  Aeropyrum pernix K1
NP_342888   4 YFVTMGFNETFLLRLLNEtsAQKED----SLVIVVpsp--ivSGTRAAIESLRAQISRLny--pPPRIYEIEITDfn--- 72  Sulfolobus solfata...
NP_558441   3 LAVTVGFDARLVVRALAN--IPAREv--tLVRGATg-----nEGDAKSKEAVAEIIKALg----KGTEYVVNLRDpa--- 66  Pyrobaculum aeroph...

CAB49931   72 -SGEEMVLKLKSAiennitedrrviTILSGGMRp-LNVIILLTVITIENv---------RVKVESDFEnl---------- 130 Pyrococcus abyssi GE5
Q57824     77 vNPYEFNTNVKNFrkyiv---pktiINLTGGKR--IVGYALFYAAVLEKe--------nVEKVFYVSKl----------- 132 Methanocaldococcus...
NP_377551  80 fIVYQISDLLWTRnn--------leFYIIGGMRi-LNLALYFYAILAKTl---------GKRVKAYSYte---------d 132 Sulfolobus tokodai...
NP_070694  75 kAIREVADKIKEVegyd-----lvvVNISGGMRv-LVVIVLLACMLGLPe---------NLKVEIEKEdf---------- 129 Archaeoglobus fulg...
NP_378642  73 hVVDQVSEILKEVkdp-------liVDISGGESktLAIGTILAVAVNKR----------VGRIYLEEDee---------- 125 Sulfolobus tokodai...
NP_275660  71 sIARDMVEIIDEErahg----rrvvVNISGGRKt-QALGALFGCYARNHd---------VQRIVYVTEe----------- 125 Methanothermobacte...
NP_147813  84 rGVAKMRRVVEEAapa------sayILASGGLRw-LVVSALLTAMALQTvgvfrgikveMLRVDLESEaegidlnirpem 156 Aeropyrum pernix K1
NP_342888  73 lALSKILDIILTLpep-------iiSDLTMGMRm-INTLILLGIIVSRK----------RFTVYVRDEgggs------rv 128 Sulfolobus solfata...
NP_558441  67 eGLRQFYSLQFDE------------IALAGGPR--LLILLGFVVAALKKar-------iFVVPEYSSEa----------- 114 Pyrobaculum aeroph...

CAB49931  131 sGFISLELGPFLAPKNVRWINILCRLK----AGKSVrrIAEELGVSPATISRELKNLLKYSLVEEIsgknRPLGYVVTKA 206 Pyrococcus abyssi GE5
Q57824    133 gDIIEFPLIPPDIKLTELEMKILNLLDk--eGEMSVsnIAHKLERSLSTISEYVSQLEKKGLVKKLs---KGRRKIVKKV 207 Methanocaldococcus...
NP_377551 133 mSYKYELPVMIPAKPSDAEYEILEYLGsk-yGEVYMndIAKILNKSLPTISKQIDFLENQGYVECKe--tKPKPCKITDL 209 Sulfolobus tokodai...
NP_070694 130 sDIVELPVGVLKIVKSPLGDDKVEVLKavmnGLRDVrgLSKHLGKDESTIRRHLAALEKMGLIEVKk--rKPLIVSATEL 207 Archaeoglobus fulg...
NP_378642 126 vSFQIEDFRTAAEGLSSELLKVLSTVVan-pGIRHEv-IAEMTGKKLKTTMNVVGILKKKRLVYQKg---RGDGIYPTKL 200 Sulfolobus tokodai...
NP_275660 126 -DNELIDLPILSFGISKTKKQVLEELKa---GEKSVknLAVKIGISRGMTYNHIRELRDMGFIDRE----KLEITSAGEL 197 Methanothermobacte...
NP_147813 157 lQPLQLESVPPLATIDYKELLVVETLAg--lGRARVksIARSLQVSRTLADRLLRKLESKKLISSEvr-gRGKLYSLTDL 233 Aeropyrum pernix K1
NP_342888 129 iSFNDNTIRALMRDYSREEMKLLNVLYet-kGTGITe-LAKMLDKSEKTLINKIAELKKFGILTQKg---KDRKVELNEL 203 Sulfolobus solfata...
NP_558441 115 iDVSGLAAVTKLFGLSRRKLEILAVLD----GEKDVdtIAREVGLDNSTVYRHLVTLEEEGLTKSVg--kRGKRYHTDKL 188 Pyrobaculum aeroph...
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