Conserved Protein Domain Family
sigma70-ECF

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TIGR02937: sigma70-ECF 
RNA polymerase sigma factor, sigma-70 family
This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Statistics
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PSSM-Id: 274357
View PSSM: TIGR02937
Aligned: 228 rows
Threshold Bit Score: 32.3192
Threshold Setting Gi: 17130723
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17130723   66 SLAEGHLSAYL--QETCYWAAQRTIPQfasiqCT-LSDCFQMA---IAEVPKIL--KGCDPDqrASLKSY------GTVA 131
gi 4981047    24 EAIDLIVEKYY--PMVVKIASQYFASW-----AE-HEDIVQNG---LVGLIKAI--FYYDKTk-SSFTSF------AWRS 83
gi 28203260   31 QVRDKLIAKNDkePTVSEIAKELDIPRed--vVF-ALDAIQD----PLSLFE----PIYQDGg-DSIY------------ 86
gi 32396024   24 EALCELIAIVQ--QRAAIVLND-TRIS-----PQdFEDIVQET---VWGIYQKIcqPEFHLH--IPLHHY------INKT 84
gi 32396026   24 EAIEKLV------HYVECIARK-SFDDfsvaqAD-CDDLVQDV---VIAIYQKIqsEEFYFG--IPFEHY------INRT 84
gi 32396028   22 IELKAILQQFN--SFIMRRINYISQND-----FE-KDDLYQEV---LIKIYLALerHHFQYD--DSFIKY------ISRL 82
gi 78219376    5 NSYDGIDKYAA--DLIRHKARQLVGKAgf--tEDdRPDLEQEL---MIDLLQRM--RHFNPAk-AKKTTF------MARI 68
gi 133476     38 DALDYLITKYR--NFVRAKARSYFLIG-----AD-REDIVQEG---MIGLYKSI--RDFREDklTSFKAF------AELC 98
gi 133288     13 FDPEYLFKKYE---LLRKSVYKKFKDKmi-nqSD-REDLMGTIdqiFLQLVS-----EYNPNrgVDFPYYik--rmLELR 80
gi 497739287  42 AKAVTDISKYC--QTCWRNAR--LPADr----WQ---DCTQAV---FVRLLE-----RVEAD------KWgavlvdSETS 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17130723  132 FGNIIRD---ALR---QKQ------EIDFcndwalllklsrkqlqeslkssgltdetmasyllawksftdgyiltkspka 199
gi 4981047    84 VDSEIKSfltYLN---RKKnrmlsdAVNVdgm------------------------------------------------ 112
gi 28203260   87 ----VMD---QIS---DTK------------------------------------------------------------- 95
gi 32396024   85 LYYKKMD----HR---RKRahqhhfLSQFie------------------------------------------------- 108
gi 32396026   85 IHRRKLD---YRR---KKLthqrifENYVdg------------------------------------------------- 109
gi 32396028   83 IKSVKCD---YYR---RHYtqqkryTNVVnd------------------------------------------------- 107
gi 78219376   69 VERHIST---ILE---ARFaqcrdwRLCQts------------------------------------------------- 93
gi 133476     99 ITRQIIT---AIKtatRQK------------------------------------------------------------- 114
gi 133288     81 TYHHITK---YLK---RINgetslyVKNEdg------------------------------------------------- 105
gi 497739287  97 ERREFLR---AID---AVKkrtqraRKFA--------------------------------------------------- 119
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17130723  200 rklqkpeddtwDIIAQLYNRDRltqlnpsvrecnretleqwllfcakqarsylypvvsslnipkvgqadgewqddlpdts 279
gi 4981047   113 ---------ekEEDDAPFEVPD---------------------------------------------------------- 125
gi 28203260   96 -----------NLDDSWIENIA---------------------------------------------------------- 106
gi 32396024  109 ----------tYEAEYAYQ-IH---------------------------------------------------------- 119
gi 32396026  110 ----------yAVGYRTQLAEQ---------------------------------------------------------- 121
gi 32396028  108 ---------avVEYQTNLLNRD---------------------------------------------------------- 120
gi 78219376   94 ----------lNEPLDNGEGDTteridfldg------------------------------------------------- 114
gi 133476    115 -----------HIPLNSYVSLDkpiydeesdrt----------------------------------------------- 136
gi 133288    106 ----------eVLELQDTIADM---------------------------------------------------------- 117
gi 497739287 120 -----------ALSHELPDRRP---------------------------------------------------------- 130
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17130723  280 nreslladliaaeeAETQKNQQQEIYNLLVTTLAKL-PPQSQQLLQLYYQQGLTQQQIAKQQEIQQYQVSRQLSKTRESL 358
gi 4981047   126 --------------SETDVARSAFSGIILETVLELL-NEKEKEI-FLRWLDGCSYSEIAKELGVNTKKVDNTVQKVKRMI 189
gi 28203260  107 ----------------------------IKEAMRNL-NKREKLILSLRFFDGRTQMEVADEIGISQAQVSRLEKTALKHM 157
gi 32396024  120 --------------KAQGDLFIEENFSEVQNQAQIL-SAFELKL-LYYLIEEWTPIEIAHQLNVSVKRVYNGIYRLRRKL 183
gi 32396026  122 --------------QRHSHEYLHYIQDTLQQTLQQL-SSFEMHV-LDYLIAEWRPAEIARELNVSDKKVYNALYRIRQKL 185
gi 32396028  121 --------------RVEREILTCEAIKLLNAACEKL-TKQEREV-FEFYSKGYKPKEIAHLLGIKDKVVYNAIQRCKMKI 184
gi 78219376  115 ------egslgggtRETRERLAHEIRMDLDRAIASL-PEELRDLCVRLH--DSTMAEIAREMGIPRTTLYDRLSKLREAF 185
gi 133476    137 ---lldvisgakvmNPEELIINQEEFDDIELKMGELlSDLERKV-LALYLDGRSYQEISEELNRHVKSIDNALQRVKRKL 212
gi 133288    118 --------------HAEEIFSRIVDLHSINPYME-L-GEKHRNLMIGLFIRKKTLQELAQEEGVPLDRLHARLYFLIRKF 181
gi 497739287 131 -----------------VTNTTRDDRDAVAKAAEQL-SPRQRRILELTA-DGWPVPEIATELATTVERVSDEKYKAIKKL 191

                 ....
gi 17130723  359 LLAI 362
gi 4981047   190 SGLG 193
gi 28203260  158 RKFV 161
gi 32396024  184 KGAL 187
gi 32396026  186 KSLV 189
gi 32396028  185 RHHL 188
gi 78219376  186 SEAG 189
gi 133476    213 EKYL 216
gi 133288    182 EKEH 185
gi 497739287 192 QHHF 195
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