Conserved Protein Domain Family
cas_TM1812
?
TIGR02221: cas_TM1812 
CRISPR-associated protein, TM1812 family
CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1812 of Thermotoga maritima, is found also in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, a large plasmid of Synechocystis sp. PCC 6803, and Fibrobacter succinogenes S85.
Links
?
Statistics
?
PSSM-Id: 274040
Aligned: 5 rows
Threshold Bit Score: 230.453
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Download Cn3D
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
Q59068         4 VLISPLGVGDTNTDVykrQYKTAEYK-FEGDIDGIESPFVLSVLIEKLKVDKVIVVGTAKSMWEKLYEyyakeVGeFDEE 82  Methanocaldococ...
BAC97576       3 TFVTFIGRGQQDRSSevkRYQTAVYQ-FEDGSLTPPVTFVGKTLIEHLAPQKVIVAGTSGSMWDELCP-----EG-LSED 75  Vibrio vulnific...
CAD84026       3 TLISFLGKGIADKTT---GYRTATYR-FDDDSKHT-TPYFGLALAGYLRPERLILVGTAGSMWDVFFE-----QQdASDD 72  Nitrosomonas eu...
BAD01963       2 KIISFLG---FNN------YQTTTYVhPTNPEITCKTRFFQEALVDFYR----------------------------PTE 44  Synechocystis s...
WP_014546240   5 IFVSFLG---LTD------YKLAVYKsWRGEGCASETRFVQKAIVELYP---------KT-----------------DLD 49  Fibrobacter suc...

Q59068        83 YWIEIGKKVGMSKYDNYALSEEDLKKIEK-VIDKYLKKINPNAVGGSkckiikygidkdeiwENFDLFMSLINEVNDGDE 161 Methanocaldococ...
BAC97576      76 FHLLLMERADQQSVDHVLLKELQDTLNHSsIGPRFHLVLLPDSASES---------------QQVAFFSAITEHIDHHDV 140 Vibrio vulnific...
CAD84026      73 DVLALIDAVRESRVDADMLSAQEKRLTKR-LGLPVICRLIPYARDAA---------------EQTEVLLTLAKLVHRSEE 136 Nitrosomonas eu...
BAD01963      45 IYVLLTKTVATVAPRGAEVTNWQG--LQDcLADKVTIRPIEDIPEGSap------------eDLWDIFDCITDCLDHGDR 110 Synechocystis s...
WP_014546240  50 KIVIFVTKESREKNEQALLEDLKELGVEP---EKIETELISVDVSDLs--------------LTWNWFESLQSKFEKGDT 112 Fibrobacter suc...

Q59068       162 IYLDITHSFRSIPLFMYVMLEFMRYFKNVKLKGIYYGMLDVIRElghAPVVDLSPIFEISEWIRGMYEFTTYGNSYLISK 241 Methanocaldococ...
BAC97576     141 ITLDITHGFRFMPILAFACIQFLQFVKRVEVDDLLYALLRFNQP---SPICSLKQLLEIGKWVNALGQFDHSGDLRVFES 217 Vibrio vulnific...
CAD84026     137 VFLDVTHGFRHLPMLALVAARYLAHVKDVKVRGLYYGALEMTSTngeTPVLQLDGMLQMLDWVESLATYNKDGDYGVFAS 216 Nitrosomonas eu...
BAD01963     111 VIFDFTHGYRFLPVVALLAISYLRTVRQVQVEGVLYGAFDPNSQgesSPTYDLLPMLSLLDWLAATDRFVNLGDGLPLAQ 190 Synechocystis s...
WP_014546240 113 LVLDVTHGFRMVPVVFSAAVAYLKRVKNVHLESVLYGAFEMKVDa--KPIVNLKDFYTISDWTEGVGRLVDTADASFLRK 190 Fibrobacter suc...

Q59068       242 LLE 244 Methanocaldococcus jannaschii DSM 2661
BAC97576     218 LLE 220 Vibrio vulnificus YJ016
CAD84026     217 LLQ 219 Nitrosomonas europaea ATCC 19718
BAD01963     191 LLQ 193 Synechocystis sp. PCC 6803
WP_014546240 191 TAE 193 Fibrobacter succinogenes
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap