Conserved Protein Domain Family
KOG1342

?
KOG1342: KOG1342 
KOG1342, Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Statistics
?
PSSM-Id: 229284
Aligned: 23 rows
Threshold Bit Score: -1
Created: 21-Jun-2003
Updated: 16-Jan-2013
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
7292522    1 MQSHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKFHSDEYVRFLRSIRPD 80  fruit fly
21431761  11 GPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVLKPFPARDRDLCRFHADDYVSFLRSITPE 90  thale cress
15238556   4 LADGGKRRVSYFYEPMIGDYYYGVNQPTKPQRIRVTHNLILSYNLHRHMEINHPDLADASDFEKFHSLEYINFLKSVTPE 83  thale cress
15242626  13 GPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRFHSPEYVDFLASVSPE 92  thale cress
1176665   23 GADVKKRNVAYYYHKDVGHFHYGQLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAADISVFHTEDYVNFLQTVTPK 102 Caenorhabditis elegans
19173094   1 ---MNNKRVVYFYDPEIGCFSYAMGHPMKPLRVKMTHTLLVGYELYKYMDVLRPFQASYENLTNFHAVDYINFLSSVSSE 77  Encephalitozoon cun...
19173189   1 ------MAVAYMFDEEVGLFHYGPRHPMKPFRTVVTHSLVKSFGLDKKMTIVK-P--EVFPLSSYHTEEYLG-------N 64  Encephalitozoon cun...
29839394   6 EPADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQE 85  human
3024397   23 PQKK---RVTYHLDEQVGNYHYGDKHPMKPHRITITNHLVMGYGLHNKMSVFSPRMATFGEMSEFHREDYLDFLKRVTPD 99  fission yeast
1723948   22 SAYSP--RVSYHFNSKVSHYHYGVKHPMKPFRLMLTDHLVSSYGLHKIMDLYETRSATRDELLQFHSEDYVNFLSKVSPE 99  baker's yeast
7292522   81 NMSE----YNKQMQRFNVGEDC--PVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDI 154 fruit fly
21431761  91 TQQD----QIRQLKRFNVGEDC--PVFDGLYSFCQTYAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDI 164 thale cress
15238556  84 TVTDphpsVSENLKRFNVDVDWdgPVFHNLFDYCRAYAGGSISAAAKLNRQEADIAINWAGGMHHVKKDKASGFGYVNDV 163 thale cress
15242626  93 SMGDp--sAARNLRRFNVGEDC--PVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDI 168 thale cress
1176665  103 LGLTm---PDDVLRQFNIGEDC--PIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWPGGLHHAKKSEASGFCYVNDI 177 Caenorhabditis elegans
19173094  78 NMEE----MIKDLHKFNIRDDC--PVFPGLYDYCRLTSGGSIYAAQKINSGKYDVAINWAGGLHHAKRGEASGFCYVNDI 151 Encephalitozoon cun...
19173189  65 LG-------K------NETPDC--PNFIGLPRFCELYGSASINSAMILSEGAYSTVINWSGGLHHAHKAIPSGFCHVNDI 129 Encephalitozoon cun...
29839394  86 GDDD-----HPDSIEYGLGYDC--PATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDA 158 human
3024397  100 NAEQf---AD-KFQQFNIGDDC--PVFDGTYEFSQRSAGASLDASRKLVQGQTDIAINWSGGLHHAKRGEASGFCYVNDI 173 fission yeast
1723948  100 NANKl---PRGTLENFNIGDDC--PIFQNLYDYTTLYTGASLDATRKLINNQSDIAINWSGGLHHAKKNSPSGFCYVNDI 174 baker's yeast
7292522  155 VLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYG-EYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDD 233 fruit fly
21431761 165 VLAILELLKQHERVLYVDIDIHHGDGVEEAFYATDRVMTVSFHKFG-DYFPGTGHIQDIGYGSGKYYSLNVPLDDGIDDE 243 thale cress
15238556 164 VLAILELLKSFKRVLYIEIGFPHGDEVEEAFKDTDRVMTVSFHKVG-D----TGDISDYGEGKGQYYSLNAPLKDGLDDF 238 thale cress
15242626 169 VLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFG-DFFPGTGHIRDVGAEKGKYYALNVPLNDGMDDE 247 thale cress
1176665  178 VLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGq-YFPGSGSIMDKGVGPGKYFAINVPLMAAIRDE 256 Caenorhabditis elegans
19173094 152 VLGILELLKYNKRILYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYG-DYFPGTGMVTDTGLAKGKGYSVNVPLKDGIDDE 230 Encephalitozoon cun...
19173189 130 VLAILELLKTYRRVMYIDIDVHHGDGVEEAFLECDRVLTLSLHKYGdGFFPETGTLITTG-----HRAVNVPLLSGIDDP 204 Encephalitozoon cun...
29839394 159 VLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSpGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDE 238 human
3024397  174 VLAILNMLRFFPRVLYIDIDIHHGDGVQQAFYESDRVLTVSFHKYNgDFFPATGNFDENGVKGGKYFALNVPLEDGIGDE 253 fission yeast
1723948  175 VLSILNLLRYHPRILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYNgEFFPGTGDLTEIGCDKGKHFALNVPLEDGIDDD 254 baker's yeast
7292522  234 AYESIFVPIISKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGGYTIRNVSRCWTYE 313 fruit fly
21431761 244 SYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYE 323 thale cress
15238556 239 SLRGLFIPVIHRAMEIYEPEVIVLQCGADSLAGDPFGTFNLSIKGHGDCLQYVRSFNVPLMILGGGGYTLPNVARCWCYE 318 thale cress
15242626 248 SFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYE 327 thale cress
1176665  257 PYLKLFESVISGVEENFNPEAIVLQCGSDSLCEDRLGQFALSFNAHARAVKYVKSLGKPLMVLGGGGYTLRNVARCWALE 336 Caenorhabditis elegans
19173094 231 SYFSIFKPIVSKVIETYQPNAIVLQSGADSLSGDKLGCFNLSHLGHSRCIKFVQSFNIPLILLGGGGYTIGNVSKAWAYG 310 Encephalitozoon cun...
19173189 205 SYRYIFEPIVESCVRRFSPDAIVLQCGADSLGEDRLGCFNLSIEGHASCVRFVSSLGIPLLCLGGGGYTLTNVARCWAYE 284 Encephalitozoon cun...
29839394 239 KYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYL 318 human
3024397  254 QYTSLFKSIIEPTINTFQPSAIVLQCGADSLGYDRLGVFNLSIHAHGECVRFTRSFNIPMLVVGGGGYTLRNVARAWCYE 333 fission yeast
1723948  255 SYINLFKSIVDPLIMTFKPTLIVQQCGADSLGHDRLGCFNLNIKAHGECVKFVKSFGLPMLVVGGGGYTPRNVSRLWTYE 334 baker's yeast
7292522  314 TSVALAVEIANELPYND-YFEYFGPDFKLHISP-SNMTNQNTSEYLEKIKNRLFENLRMLPHAPGVQIQAIPedainDES 391 fruit fly
21431761 324 TGVALGVEVEDKMPEHE-YYEYFGPDYTLHVAP-SNMENKNSRQMLEEIRNDLLHNLSKLQHAPSVPFQERPpdtetPEV 401 thale cress
15238556 319 TAIAVGEQLDNDLPGND-YMKYFRPDYKLHILP-TNRQNLNTRLDIITMRETLLAQLSLVMHAPSVPFQDTPsssqaTEA 396 thale cress
15242626 328 TAVAVGVEPDNKLPYNE-YFEYFGPDYTLHVDP-SPMENLNTPKDMERIRNTLLEQLSGLIHAPSVQFQHTPpvnrvLDE 405 thale cress
1176665  337 TGVILGLRMDDEIPGTSlYSHYFTPR-LLRPNLvPKMNDANSAAYLASIEKETLACLRMIRGAPSVQMQNIVg----IRL 411 Caenorhabditis elegans
19173094 311 TSVVLDVDIPREIPYNE-YFDYYAPTYRIDVPT-SNMANQNTREGLEDIIAKVYENLRSLSHAPSVQMVSIP-----PSF 383 Encephalitozoon cun...
19173189 285 TAVLCGEDPATEIPSDNpFYTYFGP--LHTVNPvFKRKYAN---------RNDVEYLDMV----------MS-----FIL 338 Encephalitozoon cun...
29839394 319 TGVILGKTLSSEIPDHE-FFTAYGPDYVLEITP-SCRPDRNEPHRIQQILNYIKGNLKHVV------------------- 377 human
3024397  334 TSICVNEQIPSELPRETlYYEFFAPDYTLHPRLtTKIENKNTPKALEDLRIRALEQLRYLGGAPSVQM--QQi----P-P 406 fission yeast
1723948  335 TGILNDVLLPEDIPEDIpFRDSFGPDYSLYPMLdDLYENKNSKKLLEDIRIRCLENIRYLQGAPSVRMDAECi----PTQ 410 baker's yeast
7292522  392 DD---EDKVDKDDRL---------------PQSDKDKRIVPENEYSDSEDEG 425 fruit fly
21431761 402 DEdqeDGDKRWDPDSdmdvdddrkpipsrvKREAVEPDTKDKDGLKGIMERG 453 thale cress
15238556 397 AEv--DMEKRNDPRi------------------------------------- 409 thale cress
15242626 406 PEd--DMETRPKPRiws-----------gtATYESDSDDDDKP-LHGYSCRG 443 thale cress
1176665  412 DEieqIEENERLQKS---------------SKSSIEYEVGKVSEKMEEECFV 448 Caenorhabditis elegans
19173094 384 IS----DESDEDEVS---------------KKKAEAEDSDDYKAFSDSKDED 416 Encephalitozoon cuniculi
19173189 339 DKvdrF---------------------------------------------- 344 Encephalitozoon cuniculi
29839394     ----------------------------------------------------     human
3024397  407 DLtghLEEEDERLND---------------EYLDKAVDVRVRG--------- 434 fission yeast
1723948  411 DIsalTEEEDKIIQE---------------MNEETEADSSNRLEEMEKENSG 447 baker's yeast
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap