1N52


Conserved Protein Domain Family
KOG1104

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KOG1104: KOG1104 
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KOG1104, Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Statistics
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PSSM-Id: 229048
Aligned: 7 rows
Threshold Bit Score: -1
Created: 20-Jun-2003
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1N52_A     1 MSRRRHSD-ENDGGQPHKR------RKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPN---YKSKILR 70  human
7290517    1 MSRRRAHD-TEDEGYDHRRnk---rRRVSENQEIEDRLESLILRVGERSTSSVESNLEGLVSVLEADLGT---FRLKILR 73  fruit fly
7300747    1 MGRRKRED-SSDEEGDDCR-------QKRTAETTVKTVEQLMRELSFPGHTPLELKLGNLGYLLGKGMSVd--LKENLIN 70  fruit fly
25411497   1 ---------------------------MSNWKTLLLRIGEKGPEYG--TSSDYKDHIETCFGVIRREIER---SGDQVLP 48  thale cress
25144342   1 MSRRRQFD-DEDEVQMKRR------RGAPLIEDVEKKLQGVIGKVGENTGSSIECNLDKLTAFLHDDLEK---YRASIID 70  Caenorhabditis elegans
19115016   6 GSTRPRKRtREGENYGFRP------HRGNSQELLAARIKKDITFLADPRGNSVAADDINYVAMSLSREANdpeTISTILD 79  fission yeast
1730253    2 FNRKRRGDfDEDENYRDFRprmpkrQRIPPVVQLCKEMMPDIRTIG-ESVKAFEDDIKFLSEAIMNEYGHedyFNNALLS 80  baker's yeast
1N52_A    71 LLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLK-------------ESLKANNYNEAVYLVRFLSDLVNC 137 human
7290517   74 ILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFK-------------ESLKMCRWDAARYSLRFLADLVNC 140 fruit fly
7300747   71 ELVICLGYYPGQASAYATLVGLINVADFEFGSECLLFMAHKVG-------------ESVHIRDWNRCRGVVHCMVDLYHC 137 fruit fly
25411497  49 FLLQCAEQLPHKIPLYGTLIGLLNLENEDFVQKLVESVHANFQ-------------VALDSGNCNSIRILLRFMTSLLCS 115 thale cress
25144342  71 IIAGCAIYLPNRVTVYTTLVGLLNSKNFNFGGDVVEKLISEQQ-------------DLLSKQKYQEAQNLAIFLCDLGNS 137 Caenorhabditis elegans
19115016  80 CIQTTAFIIPVKIPHLATLIIRASLRVPLILEKAAAYFCLQYF-------------TNLNSFLYYEAKVDLRMLICMS-- 144 fission yeast
1730253   81 TLNAVVVEQPQKQAAIALLTMVVNSKNNVAGKSIINYFFEELQkwckqtyndefksTSNETGPWNKIKLILRFLSILS-- 158 baker's yeast
1N52_A   138 HVIAAPSMVAMFENFVSVTQEED--------VPQVRRDWYVYAFLSSLPWVGKELYEK-KDAEMDRIFANTESYLKRRQK 208 human
7290517  141 HVISATSLLQLLDTMIDVSNEDT--------VPQVRRDWFVFAVLSTLPWVGRDLYEK-KESALESLLLRIEVYLNKRSK 211 fruit fly
7300747  138 QVLPSSYILKLLAAFLKDCEALKdpddlvgvTPQIRRDFLAYCVLSAMPLIGRDLEG---ETAFDKLIVSLQIYIKKRSA 214 fruit fly
25411497 116 KVIQPASLIVVFETLLSSAATTVdeek-gnpSWQPQADFYVICILSSLPWGGSELAEQ-VPDEIERVLVGIQAYLSIRKN 193 thale cress
25144342 138 GVLTAQSIGEYLESFIAAAFEEN--------MPQVRNDYYIQTVLRCLPWIGKELTEK-APEQMENIGEAIGKYLELRNK 208 Caenorhabditis elegans
19115016 145 FALQPGTLKPLFSLLADAISKET--------KPSVWGDNFLRIILINLPYFIAANNDLgKKDFANEILDQCEIYVRHRK- 215 fission yeast
1730253  159 PMFLVDELINIYKSLFELSIELNnldp-gnrVPLSEAIYTNTLLNIPYLFFFNRNNDG-LRTKVEELLAYVEQNYLVKT- 235 baker's yeast
1N52_A   209 THVPMLQVWT---ADKPHPQEEYLDCLWAQIQKLKKDRWQE--------RHILRPYLA---FDSILCEAL--QHNLPPFT 272 human
7290517  212 KHHNALRVWS---SDAPHPQEEYLDCLWAQIRKLRQDNWAE--------KHIPRPYLV---FDSILCEAL--QHNLPTIV 275 fruit fly
7300747  215 LHTNMLSVWP------DFNQRDYLELLWQQVDGMRQNHWAEpe-----hQLIPRPYKS---FSETLSHGR--IHQLRDYD 278 fruit fly
25411497 194 SSTSGLNFFHngeFESSLAEKDFVEDLLDRIQSLASNGWKL--------ESVPRPHLS---FEAQLVAGK--FHELRPIK 260 thale cress
25144342 209 NHVALLQVWRe--GSTDQKQEDYLESLSAQIEALRNADWVE--------NHIPRHYSG---FETTLQDAL--QHNLPSFQ 273 Caenorhabditis elegans
19115016 216 SSITLSNPLS----IHDNLSEEELDLLYKQLILSRENDFTF--------PYISQPWKF---FESDFVHIVpvSPSIPEWT 280 fission yeast
1730253  236 TDINLLREYN---GEPPYEMVELVRVVLPNVKKALINNLEQlnelfpdwNHLLTPQTGdegFNDALTLPS--VDDLKSFV 310 baker's yeast
1N52_A   273 -----PPPHTEDSVYP---MPRVIFRMFDYTDD---PEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPG 341 human
7290517  276 -----PPPHHDNFEYP---MPWVVYRMFDYTDC---PDGPNLPGAHSIERFLIEEHLHHIIETYHHERKDCAAQLLSFPY 344 fruit fly
7300747  279 -----LAAHEERCRYP---LPRVCFRIFSCDSVg---EIPNMPPPVSIERHLLEAHILDILISFHKERKICADSLLMYAA 347 fruit fly
25411497 261 cmeqpSPPSDHSRAYSgkqKHDALTRYPQRIRRlniFPANKMEDVQPIDRFVVEEYLLDVLFYLNGCRKECASYMANLPV 340 thale cress
25144342 274 -----SPEHTSDMIYP---YPLVVFRLFQDADCsafSSKP-LPGDSSIDRFLFEGEIAWIIEKNQFNRKACARELLAFAE 344 Caenorhabditis elegans
19115016 281 -----FQPTPQQNELP------SFKRFFELFNN---FEIRTTPDASDVAASIFRDISVDVINHLEFNRVEAAQVLTDLDV 346 fission yeast
1730253  311 rl--nKNFGSVDSMWK---TPRYAFHVYLPNSAg---NFETVVPISTYAGQLFNDIIIDLVESLEFNRKEVARQVITLDL 382 baker's yeast
1N52_A   342 KNK--------------------------IPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQAT 395 human
7290517  345 KHK--------------------------IPLEYCIVEVVFAELFHMPTPRYLDICYGSILIELCKLQPATLPQVLAQAT 398 fruit fly
7300747  348 SKPq-------------------------LPVYYCIVEVILGEMLRLPTANWSTIAYGSILVELCKRQPDKIPQVVAQAL 402 fruit fly
25411497 341 TFR----------------------------YEYLMAETLFSQILLLPQPPFKTLYYTLVIMDLCKALPGAFPAVVAGAV 392 thale cress
25144342 345 ENPs-------------------------VPIGFLIFETIFGQMLRLPHAPYPAIFHCSLVLELLKLKPDDYPQILVQTV 399 Caenorhabditis elegans
19115016 347 YFTyktfalrgtpvn---elpnldpsesrWKAEDIIVEAVLGELLGSQNTTYKPVYYHSLLIECCRIAPKILAPTFGRVI 423 fission yeast
1730253  383 FFKagiftepgesiaqliatyeenplaptFKIEDLAIETILGLIFKLPSVSQPFAYFYTLLVDICQNSPKAIAPVFGRAF 462 baker's yeast
1N52_A   396 EMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSD---CLSQDPESPKPKFVREVLEKCMRLSY-HQRILDIVP- 470 human
7290517  399 EILFMRIDSMNTSCFDRFVNWFSYHLSNFKFTWSWDEWDS---CLLLDGEHPRPKFIQEVLQKCLRLSY-HQRITEMMP- 473 fruit fly
7300747  403 DIIYNRLNSMSVACFDRLVNWVSHHISNFGFNCQWSKWAQ---GLPSPIDPSATNLQPKVVFLRELLKK-CFRIKDVVP- 477 fruit fly
25411497 393 RALFEKISDLDMESRTRLILWFSHHLSNFQFIWPWEEWAF---VLDLPKWAPKRVFVQEILQREVRLSY-WDKIKQSIEn 468 thale cress
25144342 400 ECIYRRADSMQPVCIDRMVDWFSFHLSNFQYRYTWTDWKD---CLNKDAFSGSQIFVREVIEKCRRFGS-YEKIIAALP- 474 Caenorhabditis elegans
19115016 424 RLMYTMSSDLPLQTLDRFIDWFSHHLSNFNFHWKWNEWIP---DVELDDLHPKKVFMRETITRELILSY-YTRISDSLPe 499 fission yeast
1730253  463 RFFYSHLDSLDFELKLRYLDWFSIQMSNFNFSWKWNEWEDdsiKFGKYFYNPKVNFAKNLIQKELRLTSnFSEVEDSLPq 542 baker's yeast
1N52_A   471 ----PTFSALCPANPTCIYK------YGDESSNSLPGHS-V---------ALCLAVAFKSKATNDEIFSILKdvpnpnqD 530 human
7290517  474 ----TTYAKLIPLTPVPNYK------YANEEAANLPGTT-V---------AHQLVVAIRQKCTPEEVVNILKdipnsgyS 533 fruit fly
7300747  478 ----DILADFLPPPVLPHFK------FVDETLPGAILS------------KDLLEAMRSPQASPEMISEIIK-------- 527 fruit fly
25411497 469 ---aTALEELLPPKAGPNFM------YSLEEGKEKTEEQqL---------SAELSRKVKEKQTARDMIVWIE-------- 522 thale cress
25144342 475 ----QDFVKIHPCSPEVRY-------LIDEEDTALVQR------------AETFTQMFQERQPAEAFLNELK-------S 524 Caenorhabditis elegans
19115016 500 ----ELRCLLGEQPSGPNFV------YENETHPLYQQS-------------SQIIEALRLHKPLEELDIILQ-------- 548 fission yeast
1730253  543 eftkYLDTSYIPRDQLINYYqslftgYTVEEDSVRKNDLyFrqegvpmenTVRKILDYTHKANNSREVTELEsilgelkN 622 baker's yeast
1N52_A   531 DDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHS----FSALAKFHEVFKTLAESDEG-KLHVLRVMFEVWRNHPQMIAVLV 605 human
7290517  534 GEEMSDGSFNALKIDVFVQTLLNLGSKSFSHS----FAAISKFHSVFRALAETEEA-QICILHNIFELWSSHQQMMVVLI 608 fruit fly
7300747  528 ---SSTGIGPLLKINVFTQNCLHLGSKSFSHT----FGILRKYHSVFKDLVAGDPErQAAVLNGIFDVWVASDQYKFVVT 600 fruit fly
25411497 523 ET-IYPVHGFEVTLTIVVQTLLDIGSKSFTHL----VTVLERYGQVFSKLCPDNDK-QVMLLSQVSTYWKNNVQMTAVAI 596 thale cress
25144342 525 NDENDELPYNINEFGLFVMVMLKMASKTYSHN----FSALFRYQTTLKTVCDASELyQEKLLETLYSCWKTNQQMLMILT 600 Caenorhabditis elegans
19115016 549 --SEEIQNSETSAVRLVMSCAYSLGSRSFSHA----LNVFEKHLNTLKHFSRKSLDsEIEVVDELFSFWKLQPFNAVMWL 622 fission yeast
1730253  623 EYGSIISDFNRFVIILLVQAVTDSGSRSLSHAnkyiNDLKEDLKTIFAKIELDIETkEYIIIEAVLTFWNANPQTGFLVA 702 baker's yeast
1N52_A   606 DKMIRTQIVDCAAVANWIFSSE-LSRDFTR-LFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDR 683 human
7290517  609 DKLLKLQIVDCSAVATWIFSKE-MTGEFTK-LYLWEILHLTIKKMNKHVIKLNTELSEAKEKLAKADSSSSDSEDDSSHK 686 fruit fly
7300747  601 EKLVTGLIIEPISVVRWIFGPS-MRKELTK-IYIWELLHSALR----HLKRVQQKIEVVDVDDPSACDPVVKGILFTIVQ 674 fruit fly
25411497 597 DRMMGYRLVSNQAIVRWVFSPE-NVDQFHVsDQPWEILGNALNKTYNRISDLRKDISNITKNVLVAEKASANARVELEAA 675 thale cress
25144342 601 DKLLKMQVIDCSAVVGWLFDEK-MWQEHDR-QWLFEVLNQALEKLTRQINVVEKDIKELTEKTENKIKEEDDEESDIKMD 678 Caenorhabditis elegans
19115016 623 DKMLNYSIISITSIIEWLIKQD--VTIWSR-SYTWSLVNTTFNKLAARLRRSVSNKEDSSLINEANEEKEIVTNLLLSAL 699 fission yeast
1730253  703 DAFKYAGLLTSRTIFTFIFNETgLKNNGLIeATAIEAVFRNLSQQISEENESGNNFEFVFERLCTIANSTIDLLDVNADE 782 baker's yeast
1N52_A   684 K-------DGVLEEQIERLQEKVES-AQSEQKNLFLVIFQRFImiltehlvrcetdgtsvltpwykncieRLQQIFLQ-- 753 human
7290517  687 RkkpithaDKPSEEVVERMEEKLEA-ANVNQKRLFLIVFQRFImilsehllrsdtdgrdpdtdwyrwtigRLQQVFLM-- 763 fruit fly
7300747  675 R----------FVKTLCGAPFADEG---TEEHYWFQWVLGR-----------------------------LEETLFIY-- 710 fruit fly
25411497 676 Es---------KLSLVEGEPVLGE---NPAKMKRLKSTVEK-----------------------------TGEAELSL-- 712 thale cress
25144342 679 E-------DETKEEKFKQDLEDLE---NNKEKLERMVTFQKg-----------------------------LFNDFLIaf 719 Caenorhabditis elegans
19115016 700 R--------ALISENAENIWVSHWLnLMLKYVESNFLSVKKDT---------------------------IEEANEPV-- 742 fission yeast
1730253  783 D-------IEIPKVNGEMDIDDIED-DKLDLKWKYFTVIGFIKs--------------------------ILRRYSHE-- 826 baker's yeast
1N52_A   754 ------------------------------------------HHQIIQQYMVTLENLLFTAELDPHILAVFQQFCALQA 790 human
7290517  764 ------------------------------------------HHEQVQKYSSTLETLLFTSDLDTHILEVFQQFVALRA 800 fruit fly
7300747  711 ------------------------------------------ADDFRVINNKLIKMSEDASDLRPEISKTIAAFVACVM 747 fruit fly
25411497 713 ------------------------------------------RESLEAKEALLNRALSETEVLYISLMQHMILLFPFIY 749 thale cress
25144342 720 ieeiknaatsntsemdgsgdtpgtqtpkfmwlrgrfchvllaHAETLLKHSSNIADEVFSEGTDPSIIECFNQFQSLRL 798 Caenorhabditis elegans
19115016 743 ------------------------------------------QENTSEEQEDTKMQPVDAVDEQPSENNQTAADATNEE 779 fission yeast
1730253  827 ------------------------------------------YRELADKFIANIDNAIPHESTRRTISNWIQETKEV-- 861 baker's yeast
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