1BN8


Conserved Protein Domain Family
PelB

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COG3866: PelB 
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Pectate lyase [Carbohydrate transport and metabolism]
linked to 3D-structure
Statistics
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PSSM-Id: 226384
Aligned: 6 rows
Threshold Bit Score: 356.444
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1BN8_A     1 MKKVML--ATALFLGLTPAGANAADLGHQTL----GSNDGWGAYS-----TGTTGGSKASSSNVYTVSNRNQLVSALGKE 69  Bacillus subtilis
15613261   4 MKKIVS--YLFIFVLMLGTAPNAASANSYSF----KSTTGWASINad-gvNGTTGGSGGTEVTVTNAADLERYATANGKY 76  Bacillus halodurans
15616381   4 SSIVKLvaFSVVVMLWLGVSFQTAEANTPNF----N-LQGFATLN-----GGTTGGAGGDVVTVRTGNEFINALKSKNPN 73  Bacillus halodurans
16078925   4 LCLWFTvfSLFLVLLPGKALGAVDFPNTSTNg--lLGFAGNAKNEkgiskTGTTGGKNGQIVYIQSVNDLKTHLGGSTPK 81  Bacillus subtilis
15894091 108 LGLAAGnyVLKIVPVVNGVDAINEEATTQALtvkaNKREGFAFSPas-pmKTSSGGYNDDGTVASNAEILYITASNVNTV 186 Clostridium acetobu...
15643199   5 FSRVVSlvLLLVFTAVL-TGAVKASLND-------K-PVGFASVPtadlpEGTVGGLGGEIVFVRTAEELEKYTTAEGKY 75  Thermotoga maritima
1BN8_A    70 TnttpKIIYIKGTIDMNVddnlkplglndykdpeydldkylkaydpstwgkkePSGTqeeararsqKnqkarVMVDIPAN 149 Bacillus subtilis
15613261  77 ------IIKVSGSINLS------------------------------------PKG----------------KYIDVSSN 98  Bacillus halodurans
15616381  74 Rp---LTIYVNGTITPSN-----------------------------------TSDS---------K-----IDIKDVSN 101 Bacillus halodurans
16078925  82 ------ILVLQNDLSAS--------------------------------------AK---------------TTVTIGSN 102 Bacillus subtilis
15894091 187 Te--nVVTNAKGTKTTCTglvnilagrqkgyd--------kspliirmigeikASDIt-------gLnehtyIQLKGCYN 249 Clostridium acetobu...
15643199  76 ------VIVVDGTIVFE------------------------------------PK-----------------REIKVLSD 96  Thermotoga maritima
1BN8_A   150 TTIVGSGTNAKVVGGNFQIK--SDNVIIRNIEFQDAYdyfpQWDPtdgsSgnwnsqYDNITI--NGGTHIWIDHCTFNDG 225 Bacillus subtilis
15613261  99 KTIVGLNASSEIINGGLKIR--GSNVIVKNLTIRGTYv---EGDWdg-kTn----dYDGIQItgKDAHHIWIDHVTMRK- 167 Bacillus halodurans
15616381 102 VSILGVGTNGRLNGIGIKVWr-ANNIIIRNLTIHEVH----TGDK------------DAISIe-GPSRNIWVDHNELYAS 163 Bacillus halodurans
16078925 103 KTLVGSYAKKTLKNIYLTTSsaFGNVIFQNLTFEHSP----QING----N-------NDIQLylDSGMNYWIDHVTFSGH 167 Bacillus subtilis
15894091 250 VTFEGVGKDATAYGWGFLIRd-ARNLELRNVGIMMFG-------------------DDAISLd-TDNQNIWVHNNDLFYG 308 Clostridium acetobu...
15643199  97 KTIVGIN-DAKIVGGGLVIKd-AQNVIIRNIHFEGFYm---EDDPrg-kKy----dFDYINV--ENSHHIWIDHCTFVN- 163 Thermotoga maritima
1BN8_A   226 SRPdstspkyygRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSD--DGKLKITLHHNRYKNIVQRAP- 302 Bacillus subtilis
15613261 168 ----------------HGDGLIDIVNGANYVTISNSRFEQHNKSITISGNDN-DTN--TDKYKVTIQDCWFRGTTQRNP- 227 Bacillus halodurans
15616381 164 LN----------VHKDHYDGLFDVKRDAYNITFSWNYVHDGWKAMLMGNSDSDNYD-----RNITFHHNYFKNLNSRVP- 227 Bacillus halodurans
16078925 168 SYN---------ASGSDLDKLVYIGKSADYITISNSKFANHKYGLILGYPDDSQHQy-DGYPHMTIANNYFENLYVRGPg 237 Bacillus subtilis
15894091 309 AAGh-------dADQVKGDGSCDIKQDSTFVSVSYNHFHDSGKSSLCGMQDTQNYY-------VTYHHNWFDHSDSRHP- 373 Clostridium acetobu...
15643199 164 ----------------GNDGAVDIKKYSNYITVSWCKFVDHDKVSLVGSSDKEDPEqaGQAYKVTYHHNYFKNCIQRMP- 226 Thermotoga maritima
1BN8_A   303 RVRFGQVHVYNNYYEgst----sssSYP-FSYAWGIGKSSKIYAQNNVIDV----------PGLSAAKTISVfSg----- 362 Bacillus subtilis
15613261 228 RVRFGMVHLYNNYYSdmgkygrdmgYSSsLGYAIGVGVSAKIYSENNYFENl--------rHPTSFIDTTSK-P------ 292 Bacillus halodurans
15616381 228 AYRFGKAHLFSNYFE----------NILeTGINSRMG--AEMLVEHNVFENa--------tNPLGFWHSSRT-------- 279 Bacillus halodurans
16078925 238 LMRYGYFHVKNNYSN------------N-FNQAITIATKAKIYSEYNYFGKg--------sEKGGILDDKGT-------- 288 Bacillus subtilis
15894091 374 RIRVGSVHVYNNYFD----------GNAkYGVGVTKG--ASAFVEANYFRDckypmlsslqGTDIFYDSKGDfSgedggm 441 Clostridium acetobu...
15643199 227 RIRFGMAHVFNNFYSmglrtgvsgnVFPiYGVASAMG--AKVHVEGNYFMGygav---maeAGIAFLPTRIMgPv----- 296 Thermotoga maritima
1BN8_A   363 --------------GTALY---DSGTLLNGTQINASA------ANGlsssVGWTPSLHG--SIDASANVKSNVINQAG-- 415 Bacillus subtilis
15613261 293 --------------GYIR----DSGSYFVNSGSMTTR------ASG----VTWKPSDYYsyTLRNASQVRSHVINNAG-- 342 Bacillus halodurans
15616381 280 --------------GYWNv---ANNRYINSTGSMPTT-------------STTNYRPPYpyTVTPVGDVKSVVTRYAG-- 327 Bacillus halodurans
16078925 289 --------------GYFK----DIGSYPSLNKQTSPL-------------TSWNPGSNYsyRVQTPEYTKEFVTKYAGs- 336 Bacillus subtilis
15894091 442 ikaynnkiegatrlVYANQdpiQFDAYLASSRNEVVPstyktlVGGttynNFDTSSVMYkyQPDSPDDVKESVTSYAGrv 521 Clostridium acetobu...
15643199 297 -------------eGYLTLgegDAKNEFYYCKEPEVRp----vEEGk---PALDPREYYdyTLDPVQDVPKIVVDGAG-- 354 Thermotoga maritima
1BN8_A   416 -AGKLN 420 Bacillus subtilis
15613261 343 -AGK-- 345 Bacillus halodurans
15616381 328 -VGVIQ 332 Bacillus halodurans
16078925 337 qSTTLV 342 Bacillus subtilis
15894091 522 dGGDLI 527 Clostridium acetobutylicum
15643199 355 -AGKLV 359 Thermotoga maritima
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