Conserved Protein Domain Family
Sdo1

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COG1500: Sdo1 
Ribosome maturation protein Sdo1 [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 224417
Aligned: 16 rows
Threshold Bit Score: 231.052
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2501598    9 QIKLTNVSLVRLKKARKRFEVACYQNKVQDYRKGIEKDLDEVLQIHQVFMNVSKGLVANKEDLQKCFGTTNVDDVIEEIM 88  baker's yeast
6686184    1 --------MAWMEVRGKRFEILVRPELAFRYKEKGDVDLEDVLWTDTIYRDVRKGLKASPEEVKKAFGTSDPRRVAEKIL 72  Aeropyrum pernix
2501600    6 MVSLEEAVIARYTSHGEKFEILVDPYLAAKLKEGQNVDFDELLAIEVVFRDASKGEKAPEELLSKIFGTTDVKEIAKKII 85  Methanocaldococcus ...
15214358   2 PISVDKAVIARLKVHGETFEILVDPYLARDFKEGKEVPIEEILATPYVFKDAHKGDKASEKEMEKIFGTSDPYEVAKIIL 81  Pyrococcus abyssi
18313180   1 --MTKKVAVAKLDKGGEHFEILIDPDAALELKMGKPLGIDKVLVHEEIYKDAKKGLRASEQALKKVFGTTDVRKIAEIII 78  Pyrobaculum aerophilum
6648040    2 PISVDKAVIARLKIQGETFEILVDPYLARDFKEGKNVPIEEILATPYVFKDAHKGDKASEKEMEKIFGTSDPYEVAKIIL 81  Pyrococcus horikoshii
3183321    9 QIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSKGHVASRQDLKKAFGTDDIDKIILEIL 88  fission yeast
15897638   1 MTKERDYVIVKYESHGERFEILAKPKEALAFRSGKSISLSDVVVSDTIYKDVKKGLKASPASLKKVFGTTDFETIVKEIL 80  Sulfolobus solfatar...
13541136   1 MVRVEDAIVARLESHGYKFEILVDPDAIERIRKGN-IDIENDLAMPEVYKDARKGEKASEESLKEAFKTTDIAQIVVDIV 79  Thermoplasma volcanium
16082606   1 MVKVEDAIVARLESHGYHFEILVDPDAIERIRKGN-IDIENDLAFPEVYKDVRKGEKASDDSLKEAFKTTVIAQVAIEIV 79  Thermoplasma acidop...
2501598   89 HKGEIQLSEKERQLMLNKVNNEMLTIVSAKCINPVSKKRYPPTMIHKALQELKFSPVINKPAKLQALEAIKLLVSKQIIP 168 baker's yeast
6686184   73 KEGEIQLTEEQRRRLLEAKRRQIISYIARNAIDPTTGRPIPEARIEAALEEVRFPINLWRDAESQAVEAVRLIARVMPIR 152 Aeropyrum pernix
2501600   86 LKGQVQLTAKQREEIREQKKRQIITIISRNTINPQTDTPHPPHRIEKAMEELRINIDIYKSAEEQVPEIVKKLKKVLPIR 165 Methanocaldococcus ...
15214358  82 RKGEVQLTAQQRREMLEEKKRQIATIIHRHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKAIRRILPLR 161 Pyrococcus abyssi
18313180  79 KEGEIPLTAEQRRKLIEDKKRQIVEWISRNCIDVRTKTPVPPQRVENALEQARVSIDPFKSVEEQVQEVLKEIQRIIPIK 158 Pyrobaculum aerophilum
6648040   82 KKGEVQLTAQQRREMLEEKKRQIATIIHKHAVDPRTGYPHPVDRILRAMEEVGVRVDIFKDAEAQVQDVIKALRRVLPLR 161 Pyrococcus horikoshii
3183321   89 QKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIP 168 fission yeast
15897638  81 LKGELPVTAEQRKEMLETKRKQIIDFIHRNAVDPKTNLPIPPTRLEMAMEQARIQIDLNKDVEAQAMQIVKEISKIIPIK 160 Sulfolobus solfatar...
13541136  80 KKGQIQLTTEQRREMYDERRKQIVNIIAREGINPQTNTPHTPYRISQAMEEAKVKIDPFKSAEEQVQGVLKAIMPIIPIR 159 Thermoplasma volcanium
16082606  80 KKGQIQLTTEQRREMYDERRKQIVNLIAREGINPQTNTPHTPYRISQAMDEAKVKIDPLKPAEDQVQNVLKAIMPIIPIR 159 Thermoplasma acidop...
2501598  169 IVRAKMKVKVAISEPSRQPELIEKISKLIASSPGESTKpeldpWTCTGLIDPVNYRDLMTLCD----KKGTVQVLDMAVI 244 baker's yeast
6686184  153 LARALLEVKIPPPHSGRAYQALMRMGEVKKADWLPDGS-----LKAELEIPAGAQVEVTSRIQa--lARGAAEVKVKKVA 225 Aeropyrum pernix
2501600  166 FEKRDIAVKIPAEFASKAYNALYQFGAVKQEEWQPDGS-----LIVLIEIPSGIEAEFYAHLNk--iTKGNVQTKVVKKY 238 Methanocaldococcus ...
15214358 162 IEMKVIAVKIPSEYVGRAYGEVRKFGRIKKEEWASDGS-----WLFLIEIPGGVEEEFYEKLNa--lTKGNAQTKLIERK 234 Pyrococcus abyssi
18313180 159 VATARVALAVSSTYAQRVKGLVAKMAKIVNERYKSDGS-----WEALLELPAGLQDVLIARVNd--vTHGDADIRILEIV 231 Pyrobaculum aerophilum
6648040  162 IEMKVIAVKIPGEYVGRSYGEVRKFGRIKKEEWGSDGS-----WMFLIEIPGGVEEEFYEKLNa--lTKGNAQTKLIERK 234 Pyrococcus horikoshii
3183321  169 IVRARMRIRIVVDVKQGK-ALRERLRSLADEIEEENIDd---eYECIALVIPGNYKLIDELVRnetkNRGMVQVLDMSEA 244 fission yeast
15897638 161 IARALLSIKVPSEYSSKVKSQLHNLGEVKKANWLEDGT-----LLAELEIPAGAQQDVIDKLNs--lTKGEVEVKVLQVR 233 Sulfolobus solfatar...
13541136 160 FEKAKLAVKLVGDAYGKLYGELAKSGYITKEEWGKDGS-----WMGILEVPAGIQGDIIESLSr--rGGDKVQIRVIK-- 230 Thermoplasma volcanium
16082606 160 LEKAKIAVKLIGDAYGKLYGELAKSGYM-KEEWGKDGS-----WMGILEVPAGIQGDIIENLSr--rGGDKVQIKILKQ- 230 Thermoplasma acidop...
2501598  245 D 245 baker's yeast
6686184      -     Aeropyrum pernix
2501600  239 S 239 Methanocaldococcus jannaschii
15214358 235 G 235 Pyrococcus abyssi
18313180 232 Y 232 Pyrobaculum aerophilum
6648040  235 G 235 Pyrococcus horikoshii
3183321  245 R 245 fission yeast
15897638     -     Sulfolobus solfataricus
13541136     -     Thermoplasma volcanium
16082606     -     Thermoplasma acidophilum
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