Conserved Protein Domain Family
RpoF

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COG1460: RpoF 
DNA-directed RNA polymerase, subunit F [Transcription]
Statistics
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PSSM-Id: 224377
Aligned: 12 rows
Threshold Bit Score: -1
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
20095095   2 PSISLQARERSPTNVHEARKVVEKVl-----kERDPELTYDQREAVRYLKKFGSLE-PEDLEEAKEELRSILGdLttner 75  Methanopyrus kandle...
11499125   2 VEMFKEVRDFEYITISEAKEIMEEIak---krQEEAELLFETRRALKHLRLFAKLP-ADKAKELVDELVKLPQvG----- 72  Archaeoglobus fulgidus
14600797   2 LVLERRILEYKAVPYQVAKKYMYER-------VREGDIISIQESTWEYFRKVVFWDdPEAASELVEEIVKEGV------- 67  Aeropyrum pernix
20090303   1 -MIVKEVLNEELLTLAEVKDILSRIade--rrEQGIEVAYSFRKALHHAEQFSKIN-GEKSRELVNKLLELEK-M----- 70  Methanosarcina acet...
2495756    8 RMIGKKILGERYVTVSEAAEIMYNr-------AQIGELSYEQGCALDYLQKFAKLD-KEEAKKLVEELISLGI------- 72  Methanocaldococcus ...
15679324   3 PMIGKKVLESEPVSMAEVKEILEKf-------GEDHELTYEQNLVLDHVTRFSRLD-PEKSRELVEELMDIPN-I----- 68  Methanothermobacter...
14521311   1 -MIGRKKLGEKYITIAEAKEILLKKyeegkkaGIEEPLFYEARLALEHAEKFAKLS-AEKAREAVEELISAFDwM----- 73  Pyrococcus abyssi
14590955   1 -MIGRKKLGERYITISEAKEILLKKyeegikaGIEEPLFYEARLALEHAEKFAKLP-AEKARKAIEELMSEFEwM----- 73  Pyrococcus horikoshii
15897651   1 -MSSVYIVEEHYIPYSVAKKLLTDv-------IRSGGSSNLLQRTYDYLNSVEKCD-AESAQKVIEELSNIVS------- 64  Sulfolobus solfatar...
13541144   1 -------MEKKYISIPEVYNILSK----------KEQLTDMEKENLEYAGKFSRVD-PSVIDRVKGDISGIAK-L----- 56  Thermoplasma volcanium
16082290   1 -----MTMEKKYISIPEVIDLLSN----------RENLTDLEKENLAYAEKFARID-PKAIKKVREDILSIVD-M----- 58  Thermoplasma acidop...
15790242   1 MTIFKETVETEPLTVSEAKALLSEVete-ralDEDRELRFELSRAIEHANRFALLE-PAESREFVDELLALDVlD----- 73  Halobacterium sp. N...
11499125   2 VEMFKEVRDFEYITISEAKEIMEEIak---krQEEAELLFETRRALKHLRLFAKLP-ADKAKELVDELVKLPQvG----- 72  Archaeoglobus fulgidus
14600797   2 LVLERRILEYKAVPYQVAKKYMYER-------VREGDIISIQESTWEYFRKVVFWDdPEAASELVEEIVKEGV------- 67  Aeropyrum pernix
20090303   1 -MIVKEVLNEELLTLAEVKDILSRIade--rrEQGIEVAYSFRKALHHAEQFSKIN-GEKSRELVNKLLELEK-M----- 70  Methanosarcina acet...
2495756    8 RMIGKKILGERYVTVSEAAEIMYNr-------AQIGELSYEQGCALDYLQKFAKLD-KEEAKKLVEELISLGI------- 72  Methanocaldococcus ...
15679324   3 PMIGKKVLESEPVSMAEVKEILEKf-------GEDHELTYEQNLVLDHVTRFSRLD-PEKSRELVEELMDIPN-I----- 68  Methanothermobacter...
14521311   1 -MIGRKKLGEKYITIAEAKEILLKKyeegkkaGIEEPLFYEARLALEHAEKFAKLS-AEKAREAVEELISAFDwM----- 73  Pyrococcus abyssi
14590955   1 -MIGRKKLGERYITISEAKEILLKKyeegikaGIEEPLFYEARLALEHAEKFAKLP-AEKARKAIEELMSEFEwM----- 73  Pyrococcus horikoshii
15897651   1 -MSSVYIVEEHYIPYSVAKKLLTDv-------IRSGGSSNLLQRTYDYLNSVEKCD-AESAQKVIEELSNIVS------- 64  Sulfolobus solfatar...
13541144   1 -------MEKKYISIPEVYNILSK----------KEQLTDMEKENLEYAGKFSRVD-PSVIDRVKGDISGIAK-L----- 56  Thermoplasma volcanium
16082290   1 -----MTMEKKYISIPEVIDLLSN----------RENLTDLEKENLAYAEKFARID-PKAIKKVREDILSIVD-M----- 58  Thermoplasma acidop...
15790242   1 MTIFKETVETEPLTVSEAKALLSEVete-ralDEDRELRFELSRAIEHANRFALLE-PAESREFVDELLALDVlD----- 73  Halobacterium sp. N...
20095095  76 tVEILVNKILEVQPRSEEEIKVLLESAGKRLlrraDEDVVRAILEVSERIAEE 128 Methanopyrus kandleri AV19
11499125  73 -SKEIAVKLADIMPRIPDEVRIIYAKERVTL----TPEQIQEILDVIDKYRI- 119 Archaeoglobus fulgidus
14600797  68 -SREAAANIASICPKTEGELRSILEMDRSITs---VHEMASKLYPIVSKYCKD 116 Aeropyrum pernix
20090303  71 -KPVIAVRIADILPQSRDELRSIYAKEKYTL----SNEELDQILDYVFEAME- 117 Methanosarcina acetivorans C2A
2495756   73 -DEKTAVKIADILPEDLDDLRAIYYKRELP-------ENAEEILEIVRKYI-- 115 Methanocaldococcus jannaschii
15679324  69 -KRRHAVKIADIMPVDISDLRLIFAKERVPI----KADDLPGILEVIDKYRVE 116 Methanothermobacter thermautotrophicus str. De...
14521311  74 -NDRIAGKIVDIMPEDNLDLRVIFAKEEYQP----TQEEMKKILEILDKYRET 121 Pyrococcus abyssi
14590955  74 -NERIAAKLVDIMPEDNLDLRVIFAKEEHQP----TPEEMKKILEILDKYREE 121 Pyrococcus horikoshii
15897651  65 -REDVRAILASICPTTSDEVRSILVMDTNKTy---TSEDIQKIIDIIRKYIKS 113 Sulfolobus solfataricus
13541144  57 -PEKVIVKILDLKPGTPADITSILSTYNVMI----SDEDLNALADYLKKLKF- 103 Thermoplasma volcanium
16082290  59 -PEKALVKILDLKPETPGELTAILSTYGVMI----SDENLNALTDYLKKLRF- 105 Thermoplasma acidophilum
15790242  74 -DEAVAYKIVDLLPRTRTELRSVFANERYAM----SGDELDEILDVVAKYV-- 119 Halobacterium sp. NRC-1
11499125  73 -SKEIAVKLADIMPRIPDEVRIIYAKERVTL----TPEQIQEILDVIDKYRI- 119 Archaeoglobus fulgidus
14600797  68 -SREAAANIASICPKTEGELRSILEMDRSITs---VHEMASKLYPIVSKYCKD 116 Aeropyrum pernix
20090303  71 -KPVIAVRIADILPQSRDELRSIYAKEKYTL----SNEELDQILDYVFEAME- 117 Methanosarcina acetivorans C2A
2495756   73 -DEKTAVKIADILPEDLDDLRAIYYKRELP-------ENAEEILEIVRKYI-- 115 Methanocaldococcus jannaschii
15679324  69 -KRRHAVKIADIMPVDISDLRLIFAKERVPI----KADDLPGILEVIDKYRVE 116 Methanothermobacter thermautotrophicus str. De...
14521311  74 -NDRIAGKIVDIMPEDNLDLRVIFAKEEYQP----TQEEMKKILEILDKYRET 121 Pyrococcus abyssi
14590955  74 -NERIAAKLVDIMPEDNLDLRVIFAKEEHQP----TPEEMKKILEILDKYREE 121 Pyrococcus horikoshii
15897651  65 -REDVRAILASICPTTSDEVRSILVMDTNKTy---TSEDIQKIIDIIRKYIKS 113 Sulfolobus solfataricus
13541144  57 -PEKVIVKILDLKPGTPADITSILSTYNVMI----SDEDLNALADYLKKLKF- 103 Thermoplasma volcanium
16082290  59 -PEKALVKILDLKPETPGELTAILSTYGVMI----SDENLNALTDYLKKLRF- 105 Thermoplasma acidophilum
15790242  74 -DEAVAYKIVDLLPRTRTELRSVFANERYAM----SGDELDEILDVVAKYV-- 119 Halobacterium sp. NRC-1
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