1B0N


Conserved Protein Domain Family
HipB

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COG1396: HipB 
Click on image for an interactive view with Cn3D
Transcriptional regulator, contains XRE-family HTH domain [Transcription]
linked to 3D-structure
Statistics
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PSSM-Id: 224314
View PSSM: COG1396
Aligned: 387 rows
Threshold Bit Score: 25.7666
Threshold Setting Gi: 15896873
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1B0N_A     1 MIGQRIKQYRKEKGYSL----------------------------SELAEK-----------------AGVAKSYLSSI- 34  Bacillus subtilis
15896873   1 ---MDKKRRLTSFGIA-----------------------------CKKAMLek----------------eMSQTELARRv 32  Clostridium acetobu...
15896878   1 ---MREKRCLTPLGIT-----------------------------CKKMMVek----------------sISQAELAKRv 32  Clostridium acetobu...
15675814  17 SIKQVCGDYLTRQTYYRfik-----------------------nnLDISSKkllyildn-lnvnvdefLFISNNFKQYKe 72  Streptococcus pyoge...
15839081  18 MLYTYKSETTSIPTVTG----------------------------DFCPACge----------------vVLDREHGDRy 53  Xylella fastidiosa ...
16121188  19 VPFTYKGRKFIVEGVIG----------------------------QHCPACge----------------tVMTEAESDVy 54  Yersinia pestis
16799427  25 GIISRSYAIGFEKGKHEitl----------------------slfEEILKRimvpldefffiyrdfssTEDDSFWIDFVe 82  Listeria innocua
16799428   3 SYGELIRQIRQSKKISQkevytgvisksyaiefekgthaissillEKIVTKlmvsme------efffmYHQEELPEKEDf 76  Listeria innocua
16799738   3 GYGKTVRDIRTSKGIHQkdlydniisksfaiefekgkhditltlfEKILKRmnmdldeffyihrelsvSAENNYLCMNQe 82  Listeria innocua
6136714   18 IPYTFRGRKTVLKGIHG----------------------------LYCVHCee----------------sIMNKEESDAf 53  Escherichia coli
1B0N_A    35 ---ERNLQTNPSIQFL--EKVSAV------------LDVSVHTLLDEK------HETEYD-------------GQLDSEW 78  Bacillus subtilis
15896873  33 ---GSSTKYLDLVFHG--ERTGKK------------YISAIIKELGI----------DPDs------------IDKSIA- 72  Clostridium acetobu...
15896878  33 ---GTSSKYLDLIFHG--DRTGKK------------YILRIIRELGI----------DSEn------------IKENYSL 73  Clostridium acetobu...
15675814  73 fidMDTAKHYFECRNIegLNHILDsykdskstkeknLFALVKVLLATLteedclTERTYLsnylinietwshyETVLFNN 152 Streptococcus pyoge...
15839081  54 ---SELVGLFQRQVNS--AYVDPG------------YITKIRRKLDL----------DQRq------------AAELFGG 94  Xylella fastidiosa ...
16121188  55 ---AAKTMLLRKMVNT--ESIAPA------------YIVQIRKKLGL----------NQRe------------ASEIFGG 95  Yersinia pestis
16799427  83 lsgKNDVVGMQALLDKitLERTEQsevrkailhtriQTINHYLRTNVFdesnisDEYKKIihdylwkmqtwtlEEVRIFS 162 Listeria innocua
16799428  77 weaYERACKTDEIAIWelLYQKISse---------eGKINQVKSAAIKleldhiKGKQVMdkkvvrilenyliEAVFWTL 147 Listeria innocua
16799738  83 rgnIYDLASLELLYSElsKHNGELvevwkafvrsqiKLVKHLFKYHEFtvdvitSKDKCTiqkylfsidtwtlEELKICA 162 Listeria innocua
6136714   54 ---MAQVKAFRASVNA--ETVAPE------------FIVKVRKKLSL----------TQKe------------ASEIFGG 94  Escherichia coli
1B0N_A    79 EKLVRDAM--TSGVSK-------------KQ-------FREFLDYQKWrkS 107 Bacillus subtilis
15896873     --------------------------------------------------- Clostridium acetobutylicum
15896878     --------------------------------------------------- Clostridium acetobutylicum
15675814 153 CMFIFESCfiEMVFSKvilnldkyntlryYGnesirmfVNMLILFIQRqeY 203 Streptococcus pyogenes M1 GAS
15839081  95 GVNAFSRYenGKTKPP-------------LS-------LVKLFKLLDRhpD 125 Xylella fastidiosa 9a5c
16121188  96 GVNAFSRYekGKALPH-------------PS-------TIKLLQVLDKhpE 126 Yersinia pestis
16799427 163 NSISFFEEevQIHFYQimlksyekyryydRGrllfchlFANLTDELIIqnK 213 Listeria innocua
16799428 148 EDIFLFTRmlPYLSLKsrvpfyykllntlDRyrhfergRRILQTAIASiiD 198 Listeria innocua
16799738 163 NSIYFFEEdlQIQFLNqvikaihpyknydRArrvlctlLINTIEMFISrgQ 213 Listeria innocua
6136714   95 GVNAFSRYekGNAQPH-------------PS-------TIKLLRVLDKhpE 125 Escherichia coli
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