Conserved Protein Domain Family
YSH1

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COG1236: YSH1 
RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 224157
Aligned: 38 rows
Threshold Bit Score: 104.427
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6323144    1 MTYKYNCCDDGSGTTVGSVVRFDnVTLLIDPGWNPSKVSyeQCIKYWEkVIP---EIDVIILSQPTIECLGAHSLLYYNF 77  baker's yeast
14601975   1 ---------------------------------------------------------------------MKGLSRSVRES 11  Aeropyrum pernix
16127874   1 ------MSYPDVIKPEDLLCPRP-AGLYCPPGDFYIDP----VRPVD---R--------AVVTHGHADHARAGHGVVA-- 56  Caulobacter crescen...
19173576   5 FVSLTPLIKTETGVYCHMLEIDN-TKILVNCGAPYAMDMs-MYTPVLPqILS----CDAILLTSFNINCIGGLPYVLRNN 78  Encephalitozoon cun...
18314051   1 ------------------------MRIYYDRGIYIEGRR---VRFVVDpTGPltgPVDFVLITHGHSDHVSKHAYRHT-- 51  Pyrobaculum aerophilum
19114143  11 NAISSSQIKNEKFSQEVLLQFND-PSFTSEVGESPQWQSfgDANILEPlKNElv-kNEESTMSELLLCPICGITLESLTV 88  fission yeast
19112240   1 -MLNYQCLETDSYCGTSHIELDG-IHIYIDPGSDDSLKH--PEVPEQP---------DLILLSHSDLAHIGGLVYAYYKY 67  fission yeast
15897139   1 ------------MQSLVKILPNG--AILIGKRFTIDGHH---ERPFR-------------VVTHFHADHITGLEKSISIS 50  Sulfolobus solfatar...
17230712  20 LECFPYSVQHNDEGVCLLVRMGP-HRILLDCGLADISSIqkSLTPSVKrGNPp-sPADLVLVTHAHPDHARGLLALHQ-- 95  Nostoc sp. PCC 7120
13474573   1 ------------MRASDLLHPRP-EGLYCPPGDFFIDP----VRPVN---R--------ALITHGHSDHARSGHRSVL-- 50  Mesorhizobium loti
6323144   78 tshfISrIQVYATLPVINLGRVSTIDSYASAGVig-----pYDTNKLDLEDIEISFDHIVP-LKYSQLVDLRSrydgLTL 151 baker's yeast
14601975  12 -------LLIIATPYTFRFLEVLGKRVPPER----------------------------RVeLPYGASLDFDG----ERV 52  Aeropyrum pernix
16127874  57 -----------ATPETLAIMAVRYGEDFAGR-------------------------REP---IPYGESFTRDG----VSV 93  Caulobacter crescen...
19173576  79 -----YyNKVFSSVPIKVLGKICLDEHLRGMG---------------LESSVDTGCFERISeIKYSQPTAVNN----VEI 134 Encephalitozoon cun...
18314051  52 ---------VVATRETFSAMSVRFGNPPPRR-----------------------------VtVAPGNVLEIGG----VQI 89  Pyrobaculum aerophilum
19114143  89 da-nIHvNDCLDGRTTEAVSKKLKKDSVVKADPsnsstfpiSDSCKQALLPLPGKQINVRSvVPFYKLMPYNIp---FAV 164 fission yeast
19112240  68 d---WKnAYIYATLPTINMGRMTMLDAIKSN-----------YISDMSKADVDAVFDSIIP-LRYQQPTLLLGkcsgLTI 132 fission yeast
15897139  51 -------DGIIATPITLDILSLDYAIPPRKAFG-----------------------------LNYDIKMTFED----ENI 90  Sulfolobus solfatar...
17230712  96 -----------AFPNLPIYGSEVTSKLLPLN-------------WLDHNP--QEIPQLCHA-LPLRSPVELQDg---LVA 145 Nostoc sp. PCC 7120
13474573  51 -----------ATQQTLDIMALRYGEDFAGT-------------------------TQA---ARLGETIALDS----VSV 87  Mesorhizobium loti
6323144  152 LAYNAGVCPGGSIWCISTYSEK----LVYAKRWNHTRDNILNAASILDAtgkpLSTLMRPSAIITtl---dRFGSSQPFK 224 baker's yeast
14601975  53 TLVKARHIAGSAQVLVETGHGR----FGYTSDFK------MPGTPPLQD----LDILVVDATYGSp-----RLQRRWSEW 113 Aeropyrum pernix
16127874  94 TLVPAGHVLGSAQAVVRWKGLT----MVVSGDYKRRRDPTCARFEPVPC-----DVFITEATFGL------PVFRHPDDA 158 Caulobacter crescen...
19173576 135 CAYNSGNSIGGCLYKISKGPER----IIVGFNVNHRKENHLDGMSFSGIg----DCSLCVFNGNH------VLAENISIA 200 Encephalitozoon cun...
18314051  90 AVLEAGHILGSVMYLAEVDGVQ----ILVTGDFNTAGSILTDAAEPIER----PDVLVMEATYGDp----sYVFPNRAEV 157 Pyrobaculum aerophilum
19114143 165 DAFAYGAIDGVEAYFLSHFHSD-----HYGGLTPKWKHGPIYCSEVTGNl--lINVMHVDEQYVK------RLKLNQPYN 231 fission yeast
19112240 133 TAYNAGHTLGGTLWSLIKESES----VLYAVDWNHSKDKHLNGAALYSNgh-iLEALNRPNTLITdannslVSIPSRKKR 207 fission yeast
15897139  91 VLKKSDHVIGSAQVLITLENGLe---IGYTGDFKN-PG---KGTPILHP-----DILIIEATYGRp----dFRRPFKDDV 154 Sulfolobus solfatar...
17230712 146 EIFPCGHLPGAVAILLTYTTEQrsykLLYTGDFFLSNSRLVEGLRLEELrgidLNVLIIEGTYGT------SRHPHRRNQ 219 Nostoc sp. PCC 7120
13474573  88 SFHPAGHVLGSAQISVEHQGTR----IVASGDYKRQKDATCAPFEPIRC-----DVFITEATFGL------PVFRHPPDT 152 Mesorhizobium loti
6323144  225 KRSkiFKDTLKKGLSSD-GSVIIPVDMSGKFLDLFTQVHELLFEStkinahtQVPVLILSYARGRTLTYAKSMLEWLSPS 303 baker's yeast
14601975 114 DAIaaLIEIIDRFVGEG---PVWIYGYNGKLQEVMAQLRLRGv---------DYPFVADEKTYRLSLIASEFY-GVDLGE 180 Aeropyrum pernix
16127874 159 GEIrsLLLSVAQFPDR---CHLVGAYALGKAQRVIRLLREAGw---------DKTIYVHGALERLNALYEAH--GVDLGP 224 Caulobacter crescen...
19173576 201 KRDdvFRDMVGGALDSG-RKVVLPVKYS-RFLEVALILNGLMAQR-------NGKIACLSYFGQRFVERAKSMIEWAGEK 271 Encephalitozoon cun...
18314051 158 YEE--FLDVVERGISE--GGVAISAYPLGKAQEIAKLLGNKAG--------------AHASVAKYNKALGIPTGNGDEVI 219 Pyrobaculum aerophilum
19114143 232 IMGi-TVYVLDANHCPGsAMFVFETLQSNQTRRVLHCGDFRASKDh-----vMHPVLREKTIHKVYLDTTYLNPKYTFPP 305 fission yeast
19112240 208 DEA--FIESVMSSLLKG-GTVLLPVDAASRVLELCCILDNHWSASqp---plPFPILFLSPTSTKTIDYAKSMIEWMGDN 281 fission yeast
15897139 155 ESL--FADYVRDALMYG---PVRIYGYHGKLQEVMISLRKMGv---------DAPFIVGGKISKMTNIAIKYGYNISQVF 220 Sulfolobus solfatar...
17230712 220 ENQ--LAERINRAISDR-YSVVLPTPALGLGQELLMLLRSHHHFTg-----rDLDIWVDGAVAIGCDAYLELLPHLPASV 291 Nostoc sp. PCC 7120
13474573 153 EEIarLLKSAAQFPER---SHLVGAYALGKAQRVMRLLRDAGy---------DRPLYIHGALARLSEYYQSQ--GIDLGV 218 Mesorhizobium loti
6323144  304 LLKTWENRnntspfeigsrikiiapnelskypgskicfVSEVGALINevIIKVGNSEKTTLILTKPSFECASSLDKILEI 383 baker's yeast
14601975 181 VEIYTGGP----------------------------------------------IDYSAVVFLHMTRLNSIRRFPGVHVR 214 Aeropyrum pernix
16127874 225 LAPATAS--------------------------------------------GPKDAFAGQIVIAPPSAIADRWSRRFPDP 260 Caulobacter crescen...
19173576 272 VSSMFSEEk-----------------------------VNPFEFERi-eFMKYYQDVSRFDVVVVVDECVHGAMLTTTLH 321 Encephalitozoon cun...
18314051 220 VVPNLKAAp------------------------------------------PNYFKIDVSGWYADERLRKNAISRGVYGI 257 Pyrobaculum aerophilum
19114143 306 QADVVQACadka-----------------------isiKKSTDSRLLvvVSTYSIGKEKVAVAIAKSLSSRIYVVPRKMH 362 fission yeast
19112240 282 IVRDFGINenl-------------------------leFRNINTITDf-SQISHIGPGPKVILATALTLECGFSQRILLD 335 fission yeast
15897139 221 DESQSEAK--------------------------------------------EIMRDSWYISFSHYNEFKRRNGKYYNFL 256 Sulfolobus solfatar...
17230712 292 QNFARHQP------------------------------LFWDERVRP--RVRRLQAENRSIVGKSPCIVLTDSTSDLEQY 339 Nostoc sp. PCC 7120
13474573 219 LEPATVE--------------------------------------------GGKDDFTGAIVVGPPSAFADRWARRFPDP 254 Mesorhizobium loti
6323144  384 VEQDERNWKTFPEDGKSFLCDNYIsidti----keeplSKEETeafKVQLKEKKRDRNKKILlvkr-eskKLANGnaiid 458 baker's yeast
14601975 215 LTGWEMRAPAAWSGDRMIN----------------------------------------------------VSFS----- 237 Aeropyrum pernix
16127874 261 VDCFASGWMRVRARARQRG-------------------VELP----------------------------LILSD----- 288 Caulobacter crescen...
19173576 322 EFNDEDNVILLIDPRMDEILRRES--------------GAMKWynfRLVEKASEKKGMDGDEvledsvgdGSDVEgv--- 384 Encephalitozoon cun...
18314051 258 PLSDHSDFPSLVEFATAASPRLVY--------------TVYG-------------------------------FS----- 287 Pyrobaculum aerophilum
19114143 363 IIKQLENQDLIDLLTDDPTQASVHmv-----------tMMGIHpnsLLDYLEQYNSSFDKIIgy-----kVTGWTf---- 422 fission yeast
19112240 336 LMSENSNDLILFTQRSRCPQNSLAnqfiryweraskkkRDIPHpvgLYAEQAVKIKTKEPLEgeelrsyqELEFSkrnkd 415 fission yeast
15897139 257 LSGWEFKNVVKKIDEKSYT----------------------------------------------------VSFS----- 279 Sulfolobus solfatar...
17230712 340 CQPETGPWLILLPEKIDIK---VN--------------KKYS--------------APTTVE--------SYLLA----- 375 Nostoc sp. PCC 7120
13474573 255 ISCFASGWMRIRQRAKQGG-------------------VELP----------------------------LIISD----- 282 Mesorhizobium loti
6323144  459 dtngeramrnqdilvenvngvppidhimggdedddEEEENDNLLNLLKDNSeksaakkntevpvdiiiQPSAASKHKMFP 538 baker's yeast
14601975 238 -----------------------------------DHATFREIIDYVREAR-----------------PKRVIVDAYRGS 265 Aeropyrum pernix
16127874 289 ------------------------------------HADWDELTGTLDELR-----------------PGEVWITHGREE 315 Caulobacter crescen...
19173576 385 ----------------------------------eTHWSEVRHEIWCEDEDe---------------vFPSVARRRAYDD 415 Encephalitozoon cun...
18314051 288 ----------------------------------------ERLARYLRKIG------------------LKAYTIPGSVG 309 Pyrobaculum aerophilum
19114143 423 ----------------------------------qPLENRAQLSSSLDSIIs---------------rPPKFVEYDLRAI 453 fission yeast
19112240 416 aedtalefrnrtildedlssssssedddldlntevPHVALGSSAFLMGKSFdln------------lrDPAVQALHTKYK 483 fission yeast
15897139 280 -----------------------------------DHADFDDLIYYVERTS-----------------AKYIITDGGRRS 307 Sulfolobus solfatar...
17230712 376 -----------------------------------QHSDGPGTTQLIHNLR-----------------PQHVVFVHGSPA 403 Nostoc sp. PCC 7120
13474573 283 ------------------------------------HADWDELTATIKETG-----------------AEEIWVTHGREE 309 Mesorhizobium loti
6323144  539 FNpAKIKKDDYGTVVDFTmflpddSDNVNQNSRKRPL 575 baker's yeast
14601975 266 D--AWFTAKYIEKVLGIR------SEAQP-------- 286 Aeropyrum pernix
16127874 316 ----ALERWCQLEGIPAR------ALRLVGYEDEEGE 342 Caulobacter crescentus CB15
19173576 416 YGeYMDRSLFVKEILPVEevs-eeEIEEETTIEEREV 451 Encephalitozoon cuniculi
18314051 310 -----LTRYL--------------------------- 314 Pyrobaculum aerophilum
19114143 454 RGsTDKVAAFVAPYSEHSs-----FYDLTMFCLSMNI 485 fission yeast
19112240 484 MFpYIEKRRRIDEYGEIIkhqdfsMINEPANTLELEN 520 fission yeast
15897139 308 YG-KELAEYISKKLGKIA-------ISMP-------- 328 Sulfolobus solfataricus
17230712 404 Y---LADLTCLEELQNRY------HIHSPAAETMVEL 431 Nostoc sp. PCC 7120
13474573 310 ----ALVRWCELEGIAAR------PLHLVGYEDE-GD 335 Mesorhizobium loti
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