1EYV,1BAQ


Conserved Protein Domain Family
NusB

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COG0781: NusB 
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Transcription termination factor NusB [Transcription]
linked to 3D-structure
Statistics
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PSSM-Id: 223852
View PSSM: COG0781
Aligned: 50 rows
Threshold Bit Score: 86.599
Threshold Setting Gi: 15828640
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1EYV_B     1 MSDRK------PVRGRHQARKRAVALLFEAEV-RGISAAEVVDT--RAALAEAk----P-DIA---RLHPYTAAVARGVS 63  Mycobacterium tuber...
7387971    1 ------------MDLMHEVRVLAFQKIYSIDInQS-AMDDIFD---IFNIEDK-----DlDIEn-eSIKSFYSSLVIGTF 58  Lyme disease spiroc...
7387979    7 EKFSGspisisKEFPQQKMREIILQMLYALDMaPS--AEDSLVPllMSQTAVSq------------KHVLVALNQTKSIL 72  Chlamydophila pneum...
7387974    6 SDKACapvrasRPFPKQKLRELVLQALYALEIdPEGE-DSLVSLl-MTEASVSk------------KNAAYALMFCRAIR 71  Chlamydia trachomatis
22095973   1 ------------MATRHQVRQSVISLLYAFEL-NSQNNVFVDEI--LDEKKIRn------------EQKNFTLNLYNGIL 53  Campylobacter jejuni
7387970    1 ------------MATRTQARGAVVELLYAFESgNEEIKKIASSM--LEEKKIKn------------NQLAFALSLFNGVL 54  Helicobacter pylori
1351464    1 --MAItvkgltNKLTRTQRRIAVVEFIFSLLFfLPKEAEVIQAD--FLEYDTKerqlnEwQKLivkAFSENIFSFQKKIE 76  Mycoplasma genitalium
2496266   16 PLTGAivngttSKLTRTQRRIAIVEFIFATLFfLPKTADQIQAA--FLDYDVPerplnDwQKEivkVFSERCVEFIELIE 93  Mycoplasma pneumoniae
15828640   5 MEKIInselpsIYRDKRLSRFLMICEIYKWYLsES-----NLD---INDDFVNq------------AFSLEENKVLKLIL 64  Mycoplasma pulmonis
7387981    1 ------------MATRTQARGAVVELLYAFESgNEEIKKIASSM--LEEKKIKn------------NQLAFALSLFNGVL 54  Helicobacter pylori...
1EYV_B    64 EHAAHIDDLITAHLRG--WTLDRLPAVDRAILRVSVWELLHAAD---VPEPVVVDEAVQLAKELSTDD-SPGFVNGVLGQ 137 Mycobacterium tuber...
7387971   59 DNLEHIDSLIRDISLN--WSLERMDKVDLAILRMGVYSLKFQNFe--NSKRAIIDEAILIAKKYGSKN-SYKFINGILDA 133 Lyme disease spiroc...
7387979   73 EKSQELDLIIGNALKN--KSFDSLDLVEKNVLRLTLFEHFYSPP---INKAILIAEAIRLVKKFSYSE-ACPFIQAILND 146 Chlamydophila pneum...
7387974   72 ANQPDLDALLDATIRT--TTLARLTIIERNILRMMLFEHQQNQDccpVPVAVLIAETTRLIKKFSYSE-GSSLILAVLGS 148 Chlamydia trachomatis
22095973  54 DNLNNIDETLNSFLND--NQITALGHVERAILRLGAYELLFTD----TPSAIVINEAIELAKELANDN-SPKFINGVLDA 126 Campylobacter jejuni
7387970   55 EKINEIDALIEPHLKD--WDFKRLGSMEKAILRLGAYEIGFTP----TQNPIIINECIELGKLYAEPN-TPKFLNAILDS 127 Helicobacter pylori
1351464   77 EQQLKNQLEIQTKYNK--ISGKKIDLLTTAVVLCALSEQKAHN----TDKPLLISEALLIMDHYSQGA-EKKQTHALLDK 149 Mycoplasma genitalium
2496266   94 NQQQRNQAEVQSKYNK--VSGKKVDLLTKAVILCALSEQHAQA----TDKPLLISEALLIMDHYSQVP-EKKQTHALLDK 166 Mycoplasma pneumoniae
15828640  65 KNKTKFENLISKFLKSnsLKWEQILPLIKAIILFFSVQISLQD----LDGPVLISEALEISKDLIYEKkEVAFINAILDK 140 Mycoplasma pulmonis
7387981   55 EKINEIDALIEPHLKD--WDFKRLGSMEKAILRLGAYEIGFTP----TQNPIIINECIELGKLYAEPN-TPKFLNAILDS 127 Helicobacter pylori...
1EYV_B   138 VMLVTPQLRAA 148 Mycobacterium tuberculosis
7387971  134 LLKNMESGIEK 144 Lyme disease spirochete
7387979  147 IFTDSSLNENS 157 Chlamydophila pneumoniae
7387974  149 IFDHPAPALDA 159 Chlamydia trachomatis
22095973 127 LIKAKK----- 132 Campylobacter jejuni
7387970  128 LSKKLTQKPLN 138 Helicobacter pylori
1351464  150 LL--------- 151 Mycoplasma genitalium
2496266  167 LL--------- 168 Mycoplasma pneumoniae
15828640 141 ISKFFKELNDY 151 Mycoplasma pulmonis
7387981  128 LSKKLAQKPLI 138 Helicobacter pylori J99
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