1IHF,1IHF,1B8Z


Conserved Protein Domain Family
HimA

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COG0776: HimA 
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Bacterial nucleoid DNA-binding protein [Replication, recombination and repair]
linked to 3D-structure
Statistics
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PSSM-Id: 223847
View PSSM: COG0776
Aligned: 112 rows
Threshold Bit Score: 67.9237
Threshold Setting Gi: 1351556
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1IHF_A        2 ALTKAEMSEYLFDKLG------LSKRDAKELVELFFEEIRRALENGEQVKL-SGFGNFDLRDKNQRPGRNPKTGEDIPIT 74
gi 16125619   5 TLTRADLCEAVHEEVG------LTRQDCAGLVERTLDLVAEALEQGETVKL-SGFGVFQVRAKRARMGRNPKTGEPAEIE 77
gi 19704153   1 -MTKKEFAKLLFEKGVf-----TTRTEAEKKVDIIFDSIEKILLDGENLSI-INWGKLEIVERAPRLGRNPKTGEEVKIG 73
gi 1351556   10 PLSRSEINKIIAVATG------IKEKKIKEIFKYLNTLLLNELVSRSVCILpENLGKLRITIRNARYQKDMQTGEIRHIP 83
gi 2496402   10 PLSRSEINKIIAVATG------VKEAKIKEIFKYLNTLLLNELVSRSVCILpENLGKLRITIRNARIQKDMKTGEMKHIP 83
gi 15828558  35 TMTKKEFMQKISEHSF------ISQRDVEAIINSMVFVIKESLISEEKVTI-PMLGTFETKIKAAREGIKFTTGEKILIP 107
gi 15893011   2 TITKAKIAAMLSSKLG------FSNNLCEEIVHTVFSNIL-EIAKEQKLTL-KNFGSFEVKQKNPRPGINFHTKAPVIIE 73
gi 15604549   2 TITKNKISLMLSSKLG------FSNNLCEAIVNTVFSNIL-EIAKVQKLTL-KNFGSFEVKQKTPRPGINFHTKSPVMIA 73
gi 14194633   7 AKTRSQMIDELSKMLN------IEKKQTKAFMDTYEAFLILELSRAKEVRL-GNIGKFKVSVRAERKGINPKTGETVIIP 79
gi 14194592   1 -MTKKEIAEEIYDRLIrdynvkIQKKEVYNLVSEVFTIIQECLLKGEKVKI-SGFGTFVVKTRKPKKGMNIKKREIVEVP 78
                        90       100
                ....*....|....*....|.
1IHF_A       75 ARRVVTFRPGQKLKSRVENAS 95
gi 16125619  78 PRRVIGFRASQVMKARIDRAL 98
gi 19704153  74 KRKSVKFRPGKAFLEKLN--- 91
gi 1351556   84 PKPLVRYSPSKTIKETAAKVR 104
gi 2496402   84 PKPLVRYSPSKTIKETAAKVR 104
gi 15828558 108 EKRVVKFKPTKYIKEVVNY-- 126
gi 15893011  74 SKKHLRFVPSSKLKALINEST 94
gi 15604549  74 SKKNLRFTPSEKLKALINKSM 94
gi 14194633  80 EKTIPKFTFTKGIKEIINAGI 100
gi 14194592  79 ERKIVLFKPSKNFIKS----- 94
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