Conserved Protein Domain Family
Ssb

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COG0629: Ssb 
Single-stranded DNA-binding protein [Replication, recombination and repair]
Statistics
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PSSM-Id: 223702
View PSSM: COG0629
Aligned: 82 rows
Threshold Bit Score: 50.9367
Threshold Setting Gi: 15838159
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15895648   4 LmLNNKLYLEGVIASKLEFSHEMYGEgfynfyLDVQRLSDAKDRLFVTVSe-rLITGMDLDVGKEVIVEG-QLRSYNKFV 81
gi 19553064   3 AnPSNNFNVIGRLAADPKIFTNPDGS------RNIQIAVYSTNNFANRNG---VYEDSIVPLTQFYSASK-EGNGIYSYL 72
gi 19554175   2 AiGDTNITVVGNIVADPELRFTPSGA------AVANFRIASTPRSFNRQTn--QWEDGEALFLTVNVWRQ-AAENVAESL 72
gi 13432209   1 MaGDTTITIVGNLTADPELRFTSSGA------AVVNFTVASTPRIYDRQSg--EWKDGEALFLRCNIWRE-AAENVAESL 71
gi 6647827    1 MaGDTTITIVGNLTADPELRFTPSGA------AVANFTVASTPRIYDRQTg--EWKDGEALFLRCNIWRE-AAENVAESL 71
gi 6647827    1 MaGDTTITIVGNLTADPELRFTPSGA------AVANFTVASTPRIYDRQTg--EWKDGEALFLRCNIWRE-AAENVAESL 71
gi 15842004   1 -mFETPLTVVGHIVNDLQRRKVG-DQ------EVVKFRVASNSRRRTSDG---GWEPGNSLFITVNCWGR-LVTGVGAAL 68
gi 15609615   1 --------MVGHIVNDLQRRKVG-DQ------EVVKFRVASNSRRRTSDG---GWEPGNSLFITVNCWGR-LVTGVGAAL 61
gi 19115295   7 SrAFSKRLFSSSTVRYRDIQRLTLTGnl--tkDVERLQSQKGNEYMRYTVasnNGKDVAPTFHSVYVFDSyNFDRLQTIL 84
gi 417647     1 MfLRTQARFFHATTKKMDFSKMSIVGri--gsEFTEHTSANNNRYLKYSIasqPRRDGQTNWYNITVFNEpQINFLTEYV 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15895648  82 DGANRLILTVFTRNIQYCSE-RSKNPNQIFLDGFICKKPVYRTTPFGReisdmLLAVNRSYnksdyiptiaWGRNSRFCE 160
gi 19553064  73 KEGDQVAVNGYIHQDQFTDKsTGAKRYELNLSIDSIQPLETKSAADARrarkqVVEANKAQaaaqqapapvQQFAAQDAP 152
gi 19554175  73 SKGMRVIVTGRLKQRSYETR-EGEKRSVFEVEADEVGPS-LTFAKADVqrtprG-GNSGGNy--------gGGNQGGGLG 141
gi 13432209  72 TRGARVIVTGRLKQRSFETR-EGEKRTVVEVEVDEIGPS-LRYATAKVnkasrS-GGGGGGf--------gSGSRQAPA- 139
gi 6647827   72 TRGARVIVSGRLKQRSFETR-EGEKRTVIEVEVDEIGPS-LRYATAKVnkasrS-GGf------------gSGSRPAPA- 135
gi 6647827   72 TRGARVIVSGRLKQRSFETR-EGEKRTVIEVEVDEIGPS-LRYATAKVnkasrS-GGf------------gSGSRPAPA- 135
gi 15842004  69 GKGAPVIVVGHVYTSEYEDR-DGIRRSSLEMRATSVGPDLSRVIVRIEk-----pAYTGPS----------AGDLPAATG 132
gi 15609615  62 GKGAPVIVVGHVYTSEYEDR-DGIRRSSLEMRATSVGPDLSRVIVRIEk-----pAYTGPS----------AGDLPAATG 125
gi 19115295  85 RKGTRVYVEADAVWRSVPAGnEGS---QAKMSLRHVSADVLFYPRNKN-----GDESGEETh--------pELDADPMIN 148
gi 417647    79 RKGALVYVEADAANYVFERD-DG----SKGTTLSLVQKDINLLKNGKK--------LEDAE----------GQENAASSE 135
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15895648 161 TlkvgdniriwgRLQSREYQkkvnekdtvkkt---------------ayevsiskmervGDEENAEEANIVNIGIENAQD 225
gi 19553064 153 QyagnpfaglsqTQAPVAAQvapqp-----------------------------qyvndPYAQPQAGFVPPAPVAPQVDI 203
gi 19554175 142 GnqgnqqggfsnQNSGGFGGnqgnqqqsnqggfggnqnqsqgnnfnqggfgggspqaapDNDPWNSAPPAGSGGFGGADD 221
gi 13432209 140 ------------QMSGGVG-----------------------------------------DDPWGSAPTSGS--FGVGDE 164
gi 6647827  136 ------------QTSSASG-----------------------------------------DDPWGSAPASGS--FGGGDD 160
gi 6647827  136 ------------QTSSASG-----------------------------------------DDPWGSAPASGS--FGGGDD 160
gi 15842004 133 Tg----------AAGAADAPa--------------------------------------SAADSVSDVVVDDAITGHNPL 164
gi 15609615 126 Tg----------AAGAADAPa--------------------------------------SAADSVSDVVVDDAITGHNPL 157
gi 19115295 149 Sf------------------------------------------------------------------------------ 150
gi 417647       --------------------------------------------------------------------------------

                ....
gi 15895648 226 KKVI 229
gi 19553064 204 DPRF 207
gi 19554175 222 EPPF 225
gi 13432209 165 EPPF 168
gi 6647827  161 EPPF 164
gi 6647827  161 EPPF 164
gi 15842004 165 PISA 168
gi 15609615 158 PISA 161
gi 19115295     ----
gi 417647       ----
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