Conserved Protein Domain Family
XerC

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COG0582: XerC 
Integrase [Replication, recombination and repair, Mobilome: prophages, transposons]
Statistics
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PSSM-Id: 223655
Aligned: 370 rows
Threshold Bit Score: 32.5549
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
135956   126 TEYRTYLTKRGvriTTTNYKITANQEKTP-------VKANSYYVTNLKQFMEFYENFYFDGEEWDKDV----WDRrnlpl 194
15832765  21 FKLSDKKWQLDkenCVYPHKVVDRMPTKMk------LSYLKTLAYYASEYSSFYIQSINNLFYEWFGA----MTid---- 86  Escherichia coli O1...
19703744   1 --------------MKYHTLHDTKHTFATllvnaevNKEIIIKMIGHKRYKTTLDIYVHKNYDDMKKAinki-------- 58  Fusobacterium nucle...
20090544  19 LGQSSVNLTAHiikHFIEWCDKEGKLLESf------SEDDVFDYLDELEKHTFKQKGVEKKYSEFTKA----RNRiqvrk 88  Methanosarcina acet...
20090679  37 TSEATLRNQCValnIFAKWCDKDFSELD---------EDDIYDYFDYLESYTYERNGKIKHYSETSIY----LYKmalkk 103 Methanosarcina acet...
15603813  57 EKYSSYHVYHMyqqFQRLVISTNLEVINVpiildwkNKLGKEHEWYLGALKGFLLSWHEYGYYGVDKSvvslLESftlsg 136 Pasteurella multocida
15789988   1 --MSEPRDSLAretDADARDDPIGYFLEDmqyhgkaKRTRDAYARVLRSFEAFLSNAGAQPVDAGRRDcltwVHHl---- 74  Halobacterium sp. N...
15790102   1 -----------------MTTDLKPIDPQEakewyleNRRGELADATYKAHKYRLSPFVEWCDTEGDVSnmndLS------ 57  Halobacterium sp. N...
15838157  48 GGLS---------------------------------------------------------------------------- 51  Xylella fastidiosa ...
15803166  25 FKLSDKKWQLDkenCVYPHKVVDRMPTKMk------LSYLKTLAYYASEYSSFYIQSINNLFYEWFGA----MTid---- 90  Escherichia coli O1...
135956   195 pddkvnptqyeyTINFKGFRNTYFKQlvkryck--lrlnvdSFSYVSDIAQRLKEFFNFLDMKFkqvqrvhqltrVEIEA 272
15832765  87 ----------tiDDKAIYQLNVYLGSernyk------lnliKAFIIKWKNLNYPGVEATAIRMLeki------kiIPNQT 144 Escherichia coli O1...
19703744     --------------------------------------------------------------------------------     Fusobacterium nucle...
20090544  89 fls-fvnpylktTFKIRKPKNNKLPEdiftke---eveamiDTCQNPRDSAIVATFYESGARKGel-------laVRIRN 157 Methanosarcina acet...
20090679 104 flriiekeglskLIKCKNPATKKLPEdilske---diekllSAARNPRDKALIATLYESGARKGel-------fsVRLKH 173 Methanosarcina acet...
15603813 137 -------ndkgkSVLMRCPYTGAFTEneilalmaelarlwrEDLISFETYAYIHLLQSTARRPIqirhl--kfedLRKEI 207 Pasteurella multocida
15789988  75 -----------rEQYAESTVATYASYvnr----------fySYMQQVGVVDGNPMALVSQEMDEai---------dTNPT 124 Halobacterium sp. N...
15790102  58 ------------GRHFHQYKKWRRENgd------------cNKVTMATQLSTLKVFIDFCESIDav-------rpGLSDY 106 Halobacterium sp. N...
15838157     --------------------------------------------------------------------------------     Xylella fastidiosa ...
15803166  91 ----------tiDDKAIYQLNVYLGSernyk------lnliKAFIIKWKNLNYPGVEATAIRMLeki------kiIPNQT 148 Escherichia coli O1...
135956   273 YLselnmmgikpstitGRISILEGLFSTLLRLEWDDVPSKILIYsedypkiprakprfidefvleqlnshldKLPEYIAT 352
15832765 145 GD---------------AVKRRDPNKGPLTEAEFNNIINAVGKFyhek------------------------kiqCFLYC 185 Escherichia coli O1...
19703744     --------------------------------------------------------------------------------     Fusobacterium nucle...
20090544 158 IVfdefg----vvvniTEGKTGSRRIRLVFAASYLRQWLDCHP--------------------------------LKDNR 201 Methanosarcina acet...
20090679 174 IVfdeng----civtlPEGKTGARRVRLVFAASYLRQWIECHP--------------------------------TKDNR 217 Methanosarcina acet...
15603813 208 SQgtwnyflnipsakkRGGLFRETFKKLAITEDLYLILLNFMEYqyk-----------------------klLSLVDETF 264 Pasteurella multocida
15789988 125 RRdis---------vaAMREFIADITHPLERAVIVGLLKTGLRVgelc--------------------nldlRDVNLDAP 175 Halobacterium sp. N...
15790102 107 IDp------------pTMKNKEDVNDDYVDAETAQAIIDYQRNFn----------------------------YSQREHV 146 Halobacterium sp. N...
15838157     --------------------------------------------------------------------------------     Xylella fastidiosa ...
15803166 149 GD---------------AVKRRDPNKGPLTEAEFNNIINAVGKFyhek------------------------kiqCFLYC 189 Escherichia coli O1...
135956   353 MTMivqECGMR-----ISELCTLKKGCLLEDKDGDFFLKYYQw------------KMKKEHIVPISKEVALLIKVREDKV 415
15832765 186 YILllaITGRR-----PLQLISLKAKDLIKNERGCFLNVPKVkqr--------kcFRKEFNMVMIEPFLYDSLSMLINQN 252 Escherichia coli O1...
19703744     --------------------------------------------------------------------------------     Fusobacterium nucle...
20090544 202 DAFvfcSLRSP-----FGKLSNTGIHDQLKEI-GKRAGIP---------------VEKLHPHNFRHTRATHLSEHLTEAQ 260 Methanosarcina acet...
20090679 218 DSYlfvSSRDD-----HPLISTTALKEGLDRI-SKRAGV----------------KKRVNPHAFRHARATHLAGHLTEQQ 275 Methanosarcina acet...
15603813 265 ISSykmKLPMFidwncLKKNIKNRNFDLSLLNKDIFHYSASSlelyalrkfcihqKAISERTGEIIHVTARRFRHTRGTN 344 Pasteurella multocida
15789988 176 AVSsayEVGVRg---qLGSHPDTLYVDPAMSRGETVNGEQRSas----------nKRKRATLVPLDRELKTELVRWLAIR 242 Halobacterium sp. N...
15790102 147 IFEllwHTGMR-----NGALRAVDLDDYDNEERTLEVHHRPDqdtp------lknGKEGQRVVSLKPKVNQIVRDYIDHH 215 Halobacterium sp. N...
15838157     --------------------------------------------------------------------------------     Xylella fastidiosa ...
15803166 190 YILllaITGRR-----PLQLISLKAKDLIKNERGCFLNVPKVkqr--------kcFRKEFNMVMIEPFLYDSLSMLINQN 256 Escherichia coli O1...
135956   416 SEEfpd------------------seYLFPRKDGSPLKQET-------FRGELNKLAYEQNIVDKSGei-----yRFHAH 465
15832765 253 QAFvedkfsvgisnyrgelpifmnldKITETKRIEDFLYDLttdffhmKNSVMSKLLKHFPSKFDVRsertnsyiELNAR 332 Escherichia coli O1...
19703744     --------------------------------------------------------------------------------     Fusobacterium nucle...
20090544 261 LKEymgwt--------------ksstMTSIYTHLSGRDIDNsi----lRLNGIDIKDSEDDDRLKTAk-------CPRCK 315 Methanosarcina acet...
20090679 276 MKIylgwt--------------enssMASVYVHLSGKDIDDai----lKMNGI-IMDETHADGLRVGr-------CSRCK 329 Methanosarcina acet...
15603813 345 LGRkgv-----------------gatIIAELLDHTDTQNVKvytentaDTVQYIDRVMGAEMGKLAQaftgriisNLNES 407 Pasteurella multocida
15789988 243 PDTtsp------------------adPVFVSTQDAWGKRLTpemvrgmVRRHAEPRGWYHKGGDAAEn--------VTPH 296 Halobacterium sp. N...
15790102 216 RFGktde---------------sgrePLLTTRQGRISKTSIrsncyraTRPCEYGLGCPHDRNPDDCd------aASSYH 274 Halobacterium sp. N...
15838157     --------------------------------------------------------------------------------     Xylella fastidiosa ...
15803166 257 QAFvedkfsvgisnyrgelpifmnldKITETKRIEDFLYDLttdffhmKNSVMSKLLKHFPSKFDVRsertnsyiELNAR 336 Escherichia coli O1...
135956   466 AFRHTV-----GTRMIN-----------NGMpq----hiVQKFLGHESPEMTS-RY----AHIFDETLKNEFTKFQEKLV 520
15832765 333 RFRYTL-----GSRLAN-----------EGAsi----evIAKALDHKSVNSSI-IY----IKNNPDNVYDIDKRLSAFFN 387 Escherichia coli O1...
19703744     --------------------------------------------------------------------------------     Fusobacterium nucle...
20090544 316 ELQDGK-----NQFCFK-----------CGMpl----saQTASSIEQGTAEFNlEM----MKAVMQDPGILKLIMAEIEK 371 Methanosarcina acet...
20090679 330 ELNSES-----AMYCWK-----------CGQpl----reGAEKSVTTVNKEMEdML----LKVLTENSALKEELMREFTK 385 Methanosarcina acet...
15603813 408 ERGHDPtslitNNGIDTigacgtndfciTGYetcylcpkFRPLVDGPHQQILNkLYeekeERLKQTKSIDYASSKDRIIL 487 Pasteurella multocida
15789988 297 YFRHFF-----TTHLRNr----------tGDrg-----vVKYLRGDVADDIIDtYT-----HNWGDRVREVYLNHIYSLT 351 Halobacterium sp. N...
15790102 275 AASKCPss--hASHSLRkg-------aiTHArr----seVPIEAVSERMDVSAdVLk---KHYDKRTKKQEMKNRRGYFD 338 Halobacterium sp. N...
15838157     --------------------------------------------------------------------------------     Xylella fastidiosa ...
15803166 337 RFRYTL-----GSRLAN-----------EGAsi----evIAKALDHKSVNSSI-IY----IKNNPDNVYDIDKRLSAFFN 391 Escherichia coli O1...
135956   521 TN 522
15832765 388 PL 389 Escherichia coli O157:H7
19703744     --     Fusobacterium nucleatum subsp. nucleatum ATCC 25586
20090544 372 QK 373 Methanosarcina acetivorans C2A
20090679 386 LK 387 Methanosarcina acetivorans C2A
15603813 488 AV 489 Pasteurella multocida
15789988 352 TT 353 Halobacterium sp. NRC-1
15790102 339 NI 340 Halobacterium sp. NRC-1
15838157     --     Xylella fastidiosa 9a5c
15803166 392 PL 393 Escherichia coli O157:H7 EDL933
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