Conserved Protein Domain Family
RfaB

?
COG0438: RfaB 
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
Statistics
?
PSSM-Id: 223515
View PSSM: COG0438
Aligned: 488 rows
Threshold Bit Score: 35.6943
Threshold Setting Gi: 15794007
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665  309 FGLPVVEAMAcgAPVIGSDSSSIAEIIKRSDAL-F---NPKDINSISSkilevle-ndefreeLRRYGLKRAKDFSWRES 383
gi 15600642    3 RLLVECTYVFehPKVNSGIQRVVRNVIRELPEAdEtveCIPVAMLDGTlyqvhslapldprphSPLVRLRILVERAANYF 82
gi 18311948    1 MRVLIISR----LLWTAGAQRIAINEYHWLKRL-G---YDTELVFLRR---------------GNVTGYEELLEEVN--- 54
gi 15897694      --------------------------------------------------------------------------------
gi 15898446      --------------------------------------------------------------------------------
gi 15898583      --------------------------------------------------------------------------------
gi 13541708    2 KIIILVRILWtaGAQKIAIAEAKQLTKMGYKVK-L---VFLRATESGR---------------NLLNKLEDIDYEIFSGE 62
gi 16081784    1 MVNIDKIIGInnLPLANGLGEYAKRMEAVLGKN------ILSLVMDKR-----------------YKDMDYAGRKIYG-- 55
gi 15606367    7 FYTKLSKQLDyfCNTLRNNYELICEDITKYKKFrLn--SYDRIVVWIEnfnnvlldyldnihpVIILPKNLENANLDLLD 84
gi 15605984    1 MIINIMERLImnSIYIDGLFYKGSGIGRYYEFS-I---QELSQYAIIY----------------IYVPMKFKNEFYQQFG 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665  384 aknilkffkekfgygksvaYLFRKPRMAylsplppaqsGISYYSSELLPELSKyyevelivnqndvsdeyvranfpirtv 463
gi 15600642   83 wlgq-----------rtleKRRPFRSSPwarrllyvacRLFAFAFLSIPLRLLdrilgkq-------------------- 131
gi 18311948   55 --------------------YKVVRRGHg---------PLTPFFYTLTKIFAPdr------------------------- 80
gi 15897694      --------------------------------------------------------------------------------
gi 15898446      --------------------------------------------------------------------------------
gi 15898583      --------------------------------------------------------------------------------
gi 13541708   63 -------------------NYKPKLIYS----------FITGLFMLDRRGEGt--------------------------- 86
gi 16081784   56 -------------------YYPPITNG------------YLLNVYLSRSILK---------------------------- 76
gi 15606367   85 ekliyyafgwnglkllkdeRKDLYLLALlkllinkskgAILSKDFTKLKKYWLinrn----------------------- 141
gi 15605984   61 -------------------NNDKIVPIS-----------TKYEKFSLKGl------------------------------ 80
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665  464 eyftknfrkyervlyhmgnsefhahmwellesyPGVVVLHDFFLSNFLwwasqgrrevlerelffshgfkglidlkesle 543
gi 15600642  132 --------------------------qpapvraTPLEHRAGDQLVLLDss------------------------------ 155
gi 18311948   81 -------------------------------glESTVDLDLIFKIPKIak------------------------------ 99
gi 15897694    1 ---------------------------------------MMFTIALRVl------------------------------- 10
gi 15898446    1 ----------------------------------------MFTIALRVl------------------------------- 9
gi 15898583    1 -----------------------------------------MDIVLRIl------------------------------- 8
gi 13541708   87 ---------------------------------VDYNLINKFARSVKK-------------------------------- 101
gi 16081784   77 ----------------------------------KYYKGKFPHLLSP--------------------------------- 89
gi 15606367  142 -----------------------------rvkfSDNFFTHSIVEAIEEiy------------------------------ 162
gi 15605984   81 ---------------------------------LIQSKILKSLENKVYlf------------------------------ 97
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665  544 kavweyPINLRILQNAIGIIVHSEHSIELAKEFYETEKEKFSIIPQMRKVEKIRDKKvakkefgYEDETFLICSFGiivn 623
gi 15600642  156 ----whADFFPLAERLKSEGVGIVSVIYDLIPLTHPQFCDAGLVKVFNHWFDWIAAT--------ADGYVAISETIrde- 222
gi 18311948  100 -----kEGADYLICHDQFTGIGCYQAYRKYG-IPYTIFIHEKVVNYRQPIFGKIIN--------NIEKEILLNAKK---- 161
gi 15897694   11 ------WNGGVAR------IAVEQARNAK-AKLLVYRESFYN---YDLSG--------------IYVEFLRRKGEKgflt 60
gi 15898446   10 ------WNGGVAR------IAVEQARNAK-AKLLVYRESFYN---YDLSG--------------IYVEFLRRKGEKgflt 59
gi 15898583    9 ------WTGGVTR------VALEEARNIPGSKLIVYRRARTY---YDLSN--------------VNLQVLFEGKSKai-- 57
gi 13541708  102 ------GDADYIICHDQWAGLAGLKIKRKLGIPYSVMMHEHVNGKYNVPVLGKIAT--------KMERDVLKNADK---- 163
gi 16081784   90 --------FFYLGSEYESKSIITIHDTYYK----WEKNKMQRLSKKIVRKYRSFKN---------IISISEQTKN----- 143
gi 15606367  163 -----rKDALEQVIKIFSSFISTDIQAKRLSKLVASNFYPNLYERKLFFDISLLRVKeggtgihRVVKAQLNCFLEnftp 237
gi 15605984   98 -----fFPHINLPLYISQNTVVTVHDLRPFTEYWDRGEFKKLIIKKLFFDRAIKYS--------KAIISISKTTKN---- 160
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665  624 tkmtelivdaflssslpEKGCVLVLVGKtfddeygirvlakaknsgGKVKVTGWVDEETWKKYleacdlavqlrtlsrge 703
gi 15600642  223 ---------------vrAEMLRRIGPEKva--------------qrWFDYFHLGSELDLVEDGas--------------- 258
gi 18311948  162 -----------------VFAVTDKVAQTine-------------khGIKAIPNYPGMDKIS------------------- 192
gi 15897694   61 -------------plfrRITEIYAKNRGd----------------eATVDLDLIVKASRIIKGpalfhdqfagitgylrk 111
gi 15898446   60 -------------plfrKITEIYAKNRGd----------------eATVDLDLIVKASRIIKEpalfhdqfagitgylrk 110
gi 15898583   58 ---------------yrFITSIYAGHRGd----------------eATVDLDRIIKARDLIKGpalfhdqfsgltgylrw 106
gi 13541708  164 -----------------IFAVTEKIANN------------------VTSIYGFKCEPDLVGMT----------------- 191
gi 16081784  144 -----------------DLIADGYDADN-------------------ISVIYNYIDPIFRK------------------- 168
gi 15606367  238 kfraepsyitvengkvtVKYAREFIKNYlkiqtntlsdvplliregDIYYLPDYYPLLTLEAYksgffdylkfkktktvf 317
gi 15605984  161 -----------------DLLKFYSEVQN------------------KIVVIYETFSINKKST------------------ 187
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665  704 vsraildclafgiptianahgfikylpnevvyklsenpskeelrealerlhedsslRDRISKNARkyveenlnpreiakr 783
gi 15600642  259 -------------------------------------------------------vEPDLLRMFKa-------------- 269
gi 18311948  193 --------------------------------------------------------ERHFSEKE---------------- 200
gi 15897694  112 vfdgedyai---------------------ylhetsltlkgikylipkvmerkvleDAKIVLTNSqwnkriledkgikae 170
gi 15898446  111 vfhgedyai---------------------ylhetsltlkgikylipkvmerkvleGAKIILTNSqwnkrvledkgmgae 169
gi 15898583  107 rkykedygv---------------------yihetsldsrsvkwflprylekivlsHSRVIITNSrwnaeilsshgfkae 165
gi 13541708  192 --------------------------------------------------------LQKTKNFHEr-------------- 201
gi 16081784  169 --------------------------------------------------------LESINKDE---------------- 176
gi 15606367  318 lvydlipikfpeyfpkrfnkiheiwlkivletsdliftisntvkedilefskkknlPFPEEKIKVlplgaetekapnvtk 397
gi 15605984  188 --------------------------------------------------------ETKQNIVG---------------- 195
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665  784 fyeaiekfysrvndseiiekisqieiprnerffdeiskhlektfpaspkqRKILVDVSEIVKvdrHTGIQRVVKSLINEL 863
gi 15600642  270 -------------------------------------------------kAPVFLMVSTIEP---RKNHGYLLDAFERAW 297
gi 18311948  201 ---------------------------------------------------DVLLAVSFWDLg---RRPWDYLEVVKHLD 226
gi 15897694  171 v----------------------------------lypgcypidkieedkENFVLTVSMWDE---GRKPEIYGEIAKRIK 213
gi 15898446  170 v----------------------------------lypgcytideveedkENFVLAVSMWDE---GRRPEIYGEIAKRIK 212
gi 15898583  166 v----------------------------------vypgcypkerinldrERIVLAVSLWDE---GRRPEIYGEIAKRIK 208
gi 13541708  202 --------------------------------------------------DNIILATSTWGK---DRSPDTYLDIIEAIP 228
gi 16081784  177 ---------------------------------------------------KTVLTVGDGIH-----KNNILVNKIVNG- 199
gi 15606367  398 ------------------------------------vsekekeiiqkvskEPFFLMVSTLEP---RKGHFQVLKAFEILW 438
gi 15605984  196 ---------------------------------------------------DYLLYVGQFKK---HKNLDRLLKAFSMIK 221
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665  864 LSIAPkkirvepvyfdENIGIYRYARKWagkilnldYEFLDDelvDFRKGDILLLLDF-YTYQNphkkgiywelkasgvk 942
gi 15600642  298 AQGSQ-----------ARLCIAGRIG-----------WKCEAlveRVRQHPELNKRLFmFNDLS---------------- 339
gi 18311948  227 ----------------YKLILAGNWRVKka-----kEKVVES----IKLMGLKDKVSL-VEGIS---------------- 264
gi 15897694  214 G----------------KLIMAGSWARR---------DTMEE---FKRKYP-EVIVTG-NIS------------------ 245
gi 15898446  213 G----------------RLIMAGSWARR---------DTMEE---FKRKYP-EVIVTG-RIS------------------ 244
gi 15898583  209 G----------------KLIMAGSWARK---------DTLEE---FKRKYG-DVIVTG-PLK------------------ 240
gi 13541708  229 D---------------FKLYFIGRWNLKs------eFEDFKN---NVYKRNLQEKVII-NDNMP---------------- 267
gi 16081784  200 -----------------RYYHIHIGK-------------------EVRADENYSGIST---------------------- 221
gi 15606367  439 KKGIN-----------VNLVIVGKEGWK--------VRKLVK---HIKKHRFLGKHLFwFGYVSd--------------- 481
gi 15605984  222 NKIK------------CKLVIAGKKDN----------IDIYN---SIKSLNLGDRVVV-IKNPS---------------- 259
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665  943 ivsvvydilplkrpkwfidgmnewfreyietlaeisdkiicisestANDLSEYLKKENLLRSNLKItsihlgaeiEKFGT 1022
gi 15600642  340 ----------------------------------------------DKSLEYAYSHAASLVFPSYV---------EGFGL 364
gi 18311948  265 ----------------------------------------------ENQLRELYNKAKFVIRFGYG----------EFGP 288
gi 15897694  246 ----------------------------------------------EDKLRELYKKASLTIRFGFN----------ER-G 268
gi 15898446  245 ----------------------------------------------EDKLRELYKKASLTIRFGFD----------ER-G 267
gi 15898583  241 ----------------------------------------------EEELQNLYNRASVLIRFGFN----------EK-G 263
gi 13541708  268 ----------------------------------------------DEELDELYASSKFVIRFGGT---------KEYGL 292
gi 16081784  222 -----------------------------------------------EELVKLYNRASVLIRLSDY---------EGFGY 245
gi 15606367  482 -----------------------------------------------ELLKELYKRALALIAASED---------EGFGL 505
gi 15605984  260 ----------------------------------------------DGELINLYKNAKFFISPSLY---------EGFGL 284
                        730       740       750       760       770       780       790       800
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11497665 1023 RglpdnwgdlvkLLQSKpsflMVGtiEPRKGHRQTlSAFEILWRDGydvnlvivgkEGW-LTQDVieriknHPELNRRLF 1101
gi 15600642  365 P-----------LVEAM----QRG--LPAMGSDIP-VFREIGGEFM-----------AYfDLADP--------QTLANLV 407
gi 18311948  289 Ai---------sVIEAI----QHT--TPVIINDEL-GTAELVKRYN----------LGL-VVHGi------DVRSIKEFI 335
gi 15897694  269 Pgm--------avLESL----CNG--TAVIANDG--LGGKEFVIEGe---------NGY-VVK--------DWKEAVDRI 314
gi 15898446  268 Pgm--------avLESL----CNG--TAVIVNDG--IGGKEFVIEGe---------NGY-VVK--------DWKEAVDRI 313
gi 15898583  264 Pgm--------gvLEAM----SYG--LPIIVNDG--LGSKELIKD-----------NGY-VVK--------DWGEAVDRI 307
gi 13541708  293 G-----------TATVF----AIShlTPVIIDSTL-GISDIITKYG----------GGY-IVDKN------DINKISNFI 339
gi 16081784  246 P-----------PLEAL----FCG--TPAVVSDIA-VFRELLGDS------------AVyVKKDE--------VSILDGI 287
gi 15606367  506 P-----------IVEAF----RNN--TPVIARDIK-VFREIAGDN------------AFfFENTK------NPEVIANAI 549
gi 15605984  285 P-----------PLESL----NYD--VPVILSDIP-VFREIYEDIA-----------IY-FNPFS-------EENIAEKI 327
                        810       820       830       840       850
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 11497665 1102 WINNASDefldKIYRACTAlimasedegFGLPIVE-AAYRGLSIIARDIKVFREIARDG 1159
gi 15600642  408 TRFEATG----EFPAERPVg---------EWRWIGwHEASRQLIARILLALGKAPAHGE 453
gi 18311948  336 NKIDEKT------YSQLQD----------NIKKVQ-NIYTWLNHVTKLIDTITFKQ--- 374
gi 15897694  315 NEVLENH----KLRRSLSI---------NALETS--KKYSWRNHANKLTEIMEKLV--- 355
gi 15898446  314 NEVLENH----KLRRSLSI---------NALETG--KKYSWRNHAIKLTEIMEKLA--- 354
gi 15898583  308 NEILEDE----KLRKEMSI---------RSWEIA--KELSWKNHAMRIKELMEEKIGE- 350
gi 13541708  340 LENNNEIn-----YEKLQN----------NLLNIT-REYTWERHCRILMNVLK------ 376
gi 16081784  288 EYAIQNR------KEMLNR-----------FESKIkSRYTKERFISNMIKYYKDL---- 325
gi 15606367  550 KTWLELY-----RKGLHP-----------KPANLKqYKYTWENHCKLLIKYLTEI---- 588
gi 15605984  328 IFALSNYn---SIKQKTVS----------EKDKIF-NKFEKRKIVKQYLELFNKIIKGE 372
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap