1GSA


Conserved Protein Domain Family
RimK

?
COG0189: RimK 
Click on image for an interactive view with Cn3D
Glutathione synthase/RimK-type ligase, ATP-grasp superfamily [Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis]
linked to 3D-structure
Statistics
?
PSSM-Id: 223267
View PSSM: COG0189
Aligned: 55 rows
Threshold Bit Score: 142.888
Threshold Setting Gi: 1351457
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
1GSA       2 IKLGIVMDPIANiNIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQ-NYEEWFSFVGEQDLPLA-D 79  Escherichia coli
15807187   1 -----------------------MTCPQAAMADLAVLYDRVRPDEKMLFGALDELGVPYDkVYTPQLTVTFDDEGRARvP 57  Deinococcus radiodu...
1351457    4 IKLKNRKALVVYd---NKDDFEKNQ-----------------TFALSLIKELQKKKLNAE-VLLLENKDINFEAKINEaE 62  Mycoplasma genitalium
2506744    4 INVVYNPAFNPIsSKLNQTQLLKNASE-----ELDIELKFFTSFDINTTKAKANLPFISN-KILFMDKNIALARWLESnG 77  Mycoplasma genitalium
2496263    4 IKLKNRKALVVY----NKTDFDKNK-----------------HFAQALVDELNKKKLVGH-ILLLDDETADHKH-IKNvE 60  Mycoplasma pneumoniae
2496264    4 ISAVYNPAFTNIaSKLNQTELLKDAAQ-----SLNIQLDFFTCFDINTNQDKTKLPFKSN-TILFLDKNIALAQWLESvG 77  Mycoplasma pneumoniae
14520656   1 ---------------------MRIGIT-------------YSVLRREEIMIKERAKEFGE-VVMLHEDELIFPGEYDVd- 44  Pyrococcus abyssi
14591482   1 ---------------------MKIGIT-------------YTILRKEELMIRENAERFGE-TVMLHEDNVRFPYKYDLd- 44  Pyrococcus horikoshii
15897110   1 ----------------------------MGRVKIGILYDMPRWEEKNLIEEGKKLGYQVA-TIYSKDFVLFSNDFTIDnD 51  Sulfolobus solfatar...
15897555   1 -------------------------------MKIALVVDIIRQEEKLIIKALNERQIDYD-VINVGQEPIPFN--KALsK 46  Sulfolobus solfatar...
1GSA      80 LDVILMRKDPPFDTefiyaTYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLT----PETLVTRNKAQLKAFWEKH- 154 Escherichia coli
15807187  58 WKVAIERCVSQSRG-----HAVTRALEGFGVKVINPSHVIELCGDKLATNARLAAAglptPRTGVAFDG-ESALGLIEEm 131 Deinococcus radiodu...
1351457   63 LILNRSRKVDFLKTn---------NQ--INTFLVN-PFNVVFIANDKYETYKWLKQnrflTVNSSLLS-------KETIk 123 Mycoplasma genitalium
2506744   78 FEVINSSIGINNADn---------KG--LSHAIIA-QYPFIKQIKTLLGPQNFDREwnpvMLDVFINQ-------IKQSm 138 Mycoplasma genitalium
2496263   61 LIINRSRRIDFLTKh---------NF--LNSFLIN-PQNIVLVANDKYETYRWLKQhkflTVDTTIFD-------PKKIk 121 Mycoplasma pneumoniae
2496264   78 LRVINSSIAINNADn---------KA--LSHAVLA-QHPTIKQIPTLIGPQNFRLAwypeKLEQFIEQ-------IKRCf 138 Mycoplasma pneumoniae
14520656  45 -VVIIRNLSHFKSLy---iAK---LFENHGIPTINPFNVILEAGDKVFATLKLAKKvp-vPRWGVALS-ENSASKLAKDm 115 Pyrococcus abyssi
14591482  45 -VVIIRNVSYFKALy---lAK---LFEEHGVPTVNPFSIMLEAGDKVFSTLKLSKKvp-vPRWGVSFS-ENSAKKIAEEl 115 Pyrococcus horikoshii
15897110  52 TDLFIQRNVSHNRA-----LITSFLVEQVGYPVINDHTTLIRCENKIFTTYILARHniptPKTFIAFDK-TNAIEYSKKl 125 Sulfolobus solfatar...
15897555  47 YDVGIIRPVSMYRA-----LYSSAILEAAGVHTINSTDAIGTCGDKILTYSKLFKHgipiPDSIIAASP-DAAMKAYEQm 120 Sulfolobus solfatar...
1GSA     155 -SDIILKPLDGMGGASIFRVKEGD--PNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYclARIPQGGE 231 Escherichia coli
15807187 132 gYPVVLKPTVGSWGRMVSRLNDRDaaEAVIEHKEVLGGPQHGVFYVQELINKPGRDIRAFVVGGQGIGAIy----rTSEH 207 Deinococcus radiodu...
1351457  124 sFPVIVKKRNSHGGKDVHLVNSAD---EIKHLNIENATE----WIVQPFLSIGTVEYRAYILFGKIIKVIkki--snANQ 194 Mycoplasma genitalium
2506744  139 eFPVIVKSVFGSFGDYVFLCLDEQ---KLRKTLMSFNQQ----AIVQKYITCSKGESVRVIVVNNKVIGAlht--tnNSD 209 Mycoplasma genitalium
2496263  122 tFPIVIKKRDSYGGEDVHLIQNAE---EIKQLPIQNPNE----WIVQPFLSIGKVEYRAYILFGKVLKTIrrt--asGDD 192 Mycoplasma pneumoniae
2496264  139 qFPVIVKSIYGSFGDYVFLCKDEQ---KLRQTLSGLTEQ----IIVQQYIATSNSEAVRVIVVNNQVVGAlht--qnEGD 209 Mycoplasma pneumoniae
14520656 116 eFPVVSKPVFGSWGRLLAKINDEDalEAVLEHRKWMKNPLYNIHYMQEYIEKPGRDIRSYVIGGEFVTAIyr----ysDH 191 Pyrococcus abyssi
14591482 116 gYPIVSKPVFGSWGRLLAKINDKDslEGLLEHKKWMKNPLYNIHYFQEFIQKPGRDIRSYVIGGEFITAIyr----ysDH 191 Pyrococcus horikoshii
15897110 126 gYPVVIKPVEGSWGRMVAKADNLDvlYSYLEYQEFSTQKYKDIYYIQEFVNKPNRDIRIFVIGDETPVGIy---rVNENN 202 Sulfolobus solfatar...
15897555 121 gFPLIDKPPIGSWGRMVSLIRDVYegKTIIEHREMLNNSALKVHIIQEYIKYKERDIRCIVIGDELLGCY--ARNIPPNE 198 Sulfolobus solfatar...
1GSA     232 TRGNLAAGGRGEPRPLTESDWKIARQIGPTLkekGLIFVGLDII----------GDRLTEINVtSPTCIREIEAEFP-VS 300 Escherichia coli
15807187 208 WITNTARGAKASNCEVTPAIADLAQRAAAAV---DGQIVAIDLVedparqndwdGLVIIEINH-TMEFKNSVS-TTG-VN 281 Deinococcus radiodu...
1351457  195 FKANFSQGAEVSLFKLKWFTKRKIKKIAKRL---REGYYAIDFFlnr-----ynRVIVNEIED-AAGARALVQLCPDlNI 265 Mycoplasma genitalium
2506744  210 FRSNLNKGAKAERFFLNKEQENLAVKISKVM---QLFYCGIDFLfdq-----drSLIFCEVN-------------PNvQL 268 Mycoplasma genitalium
2496263  193 FRANYSQNAAVDLFKLKWYIKHKIKRIAKKL---GHGYYAIDFFlnk-----ynRIVVNEIED-AAGARALTKMCPDlNL 263 Mycoplasma pneumoniae
2496264  210 FRSNLNKGAVGEPYQLSQEETKLAITISQAM---QLFYCGIDFLfdq-----drSLIFCEVN-------------SNvQL 268 Mycoplasma pneumoniae
14520656 192 WVTNTARGGRAEPCF-DERVIDVSIKAWEAF---GEGALAIDIFet------knELLVNEVNP-NMEFKN-----AArVT 255 Pyrococcus abyssi
14591482 192 WITNTARGGRAEPCD-NSEVEEISIKAWEAF---GDGALAIDIFes------pnGLLVNEVNP-NMEFKN-----ATrVT 255 Pyrococcus horikoshii
15897110 203 WRTNTALGAKAYPLKIDEELRELALKVKDII---GGFFLGIDIFedk-----drGYLVDEVNG-VPEYKNTVR--VNnFN 271 Sulfolobus solfatar...
15897555 199 WRANVALGGNPTPIQLDDNIRELAVKSVKLV---KGEFVSIDILehk-----skGYVINELND-VPEFKG-FMLATG-IN 267 Sulfolobus solfatar...
1GSA     301 ITGMLMDAIEARLQQQ 316 Escherichia coli
15807187 282 IPRLMGEYAVSLLG-- 295 Deinococcus radiodurans
1351457  266 TKIIIRTIISKFKKFL 281 Mycoplasma genitalium
2506744  269 TRSSMYLNTNLAIELL 284 Mycoplasma genitalium
2496263  264 PRVIIKSSLTHFKHHL 279 Mycoplasma pneumoniae
2496264  269 TKSSMYLKTNLAIQLL 284 Mycoplasma pneumoniae
14520656 256 GVDIARKLVEYAVEVA 271 Pyrococcus abyssi
14591482 256 GVNIAEKLVEYAVEVA 271 Pyrococcus horikoshii
15897110 272 VSKFLLEKAAEWVKK- 286 Sulfolobus solfataricus
15897555 268 VAEKLVDHIVKTYRA- 282 Sulfolobus solfataricus
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap