1I39


Conserved Protein Domain Family
RnhB

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COG0164: RnhB 
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Ribonuclease HII [Replication, recombination and repair]
linked to 3D-structure
Statistics
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PSSM-Id: 223242
View PSSM: COG0164
Aligned: 60 rows
Threshold Bit Score: 141.59
Threshold Setting Gi: 15790853
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1I39_A       21 MKAGIDEAGKGCVIGPLVVAGVACSDEDRl----RKLGVKDSKKLSQGRREELAEEIRkI-----CR-TEVLKVSPEN-- 88
gi 7388078    5 IVVGVDEAGRGSLVGDLVVAGFAVEEARLge--lQSLGVRDSKQLSPAARVELYREIS-------GVgFFTVEAIRPW-- 73
gi 19173027  18 VVVGIDEAGRGPVVGYMVYGALVVPRGVL-----EDVGFKDSKVLTPAQRYNFFQMIK-K-----KGfGYAYHCSHPDyi 86
gi 2495822    2 IIIGIDEAGRGPVLGPMVVCAFAIEKEREee--lKKLGVKDSKELTKNKRAYLKKLLEnL-----GYvEKRILEAEEIn- 73
gi 20093626   3 GVMGIDEAGRGPVFGPMVVAGVLAPKRELg------LGARDSKELTRSARRRLIRALMsD-----ERlRVDLRIVWPW-- 69
gi 1723422   64 YRLGVDEAGRGPVLGPMVYAVAYCPVDFDl---tN-YGFADSKTLASLKREELLKLICnKsnelgKNvGWSTMSISAR-- 137
gi 15899137   1 MRVGIDEAGRGALIGPMIVAGVVISDTKLkf--lKGIGVKDSKQLTRERREKLFDIVAnT-----VEaFTVVKVFPYE-- 71
gi 11387092   6 RQCGIDEAGRGPVIGPMVISLVCCDLSFL-----KEIRVKDSKALTRKRRSELFEKIMgR-----CS-VRYRILHPKD-- 72
gi 15790853   2 ARFGVDEAGKGPVLGSMFAAAVAGDPAAVp------DGVADSKRLSADRRAELDDRVR-------ASmRVGVAEVPVD-- 66
gi 1730743   34 IIMGIDEAGRGPVLGPMVYAVAYSTQKYQdetiiPNYEFDDSKKLTDPIRRMLFSKIYqD-----NEeLTQIGYATTCit 108
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1I39_A       89 ----LD-----------ERMAAKTINEILKECYAEIILRLk----pEIAYVDSPDvip-erLSRELEEItGlr------- 141
gi 7388078   74 ----EId----------GENINILVTKAVEEIVSRIVSYLgv--hpSLVVVDKYGdv--qgLRLALTRLgIepr------ 129
gi 19173027  87 temmQVr----------SVSLNEVSIGSVLRILDEVQSKCrr---vDTIYVDALGdc--rkYKERLEKDyPyr------- 144
gi 2495822   74 ---qLMn----------SINLNDIEINAFSKVAKNLIEKLnirddeIEIYIDACStnt-kkFEDSFKDKiEdiikernln 139
gi 20093626  70 ----EId----------EEGVAKAEFEAIRELVRRAMp--------DEVILDKPGnysperLRRELDLPeGin------- 120
gi 1723422  138 ----ELaagml--ryrnKYNLNLQAHDTTIDLIKKVYESGin---vTEIYVDTVGpp--isYQEKLQAHfPqa------- 199
gi 15899137  72 -----Id----------NYNLNDLTYDAVSKIILSLSSFNp-----EIVTVDKVGdek-pvIELINKLGyKs-------- 122
gi 11387092  73 ----LN-----------RMMAAESLNKIEEDEIVDLLRYAd-----DLVYIDCYDvie-erAQEIIQMRsGrq------- 124
gi 15790853  67 ----RIdd--------pETDMNTLTVAAQADALGRVVADG------MAGYVDAGDvne-qrFGRRVANRvAadv------ 121
gi 1730743  109 --plDIsrgmskfpptrNYNLNEQAHDVTMALIDGVIKQNvk---lSHVYVDTVGpp--asYQKKLEQRfPgv------- 174
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1I39_A      142 --vVAEHKADEKYPLVAAASIIAKVEREREIERLKEK--FGDFGSGYASDPRTREVLKEWIASGri--psCVRMRWKTVS 215
gi 7388078  130 -siLVEEKADSRYPVVSAASIVAKVVRDARLQVLRRMy--gVRGSGYPSDPETREWVREVFARGea--prVIRYTWSTVR 204
gi 19173027 145 --fVVEERADSKFQVVSGASIVAKVQRDMLISEFGED-----LGSGYPSDPETIRWLRKNINVVfgf-ppGVRYSWATVK 216
gi 2495822  140 ikiIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIy--GDIGSGYPSDPKTIKFLEDYFKKHkkl-pdIARTHWKTCK 216
gi 20093626 121 --lIAEERADAKYEVVSAASIVAKTYRDWIVRLLELEy--gEVGSGYPSDPRTVDRLRRELRRGgel-lkYFRRSWETYK 195
gi 1723422  200 -kvTVTKKADSLFPIVSLASICAKVTRDIQLECARESirtENWGSGYSSDARTTEWLKVNVDKIfgwkgdIVRYSWKTAK 278
gi 15899137 123 ---NVVHKADVLFVEASAASIIAKVIRDNYIDELKQVy--gDFGSGYPADPRTIKWLKSFYEKNpnp-ppIIRRSWKILR 196
gi 11387092 125 --vVCKHKADAIFPAVSAASIVSKVIRDAEIDRLHDR--FGDFGSGYPSDPRTIDFLKKYLKENqdp-seIVRIHWSTVQ 199
gi 15790853 122 -avTAEHGADDEYDLVAAASIVAKVARDAHVDALAAAf-dADIGSGYPSDSTTREFLAAYVREHgel-peCARASWQTSR 198
gi 1730743  175 -kfTVAKKADSLYCMVSVASVVAKVTRDILVESLKRDpdE-ILGSGYPSDPKTVAWLKRNQTSLmgwpanMVRFSWQTCQ 252
                       250
                ....*....|....
1I39_A      216 ------NLRQKTLD 223
gi 7388078  205 klggpwRSKKAGRN 218
gi 19173027 217 kmlgerKSRPLKGA 230
gi 2495822  217 rildksKQTKLIIE 230
gi 20093626 196 rvesevKQRKLEDF 209
gi 1723422  279 dllelpSKSQSSIE 292
gi 15899137 197 staplyYISKEGRR 210
gi 11387092 200 rll-hsEKNQKKLF 212
gi 15790853 199 dalgaaEQSALDEF 212
gi 1730743  253 tllddaSKNSIPIK 266
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