1I39


Conserved Protein Domain Family
RnhB

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COG0164: RnhB 
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Ribonuclease HII [Replication, recombination and repair]
linked to 3D-structure
Statistics
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PSSM-Id: 223242
View PSSM: COG0164
Aligned: 60 rows
Threshold Bit Score: 141.59
Threshold Setting Gi: 15790853
Created: 7-Oct-2002
Updated: 23-Jan-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1I39_A    21 MKAGIDEAGKGCVIGPLVVAGVACSDEDRl----RKLGVKDSKKLSQGRREELAEEIRkI-----CR-TEVLKVSPEN-- 88  Archaeoglobus fulgidus
7388078    5 IVVGVDEAGRGSLVGDLVVAGFAVEEARLge--lQSLGVRDSKQLSPAARVELYREIS-------GVgFFTVEAIRPW-- 73  Aeropyrum pernix
19173027  18 VVVGIDEAGRGPVVGYMVYGALVVPRGVL-----EDVGFKDSKVLTPAQRYNFFQMIK-K-----KGfGYAYHCSHPDyi 86  Encephalitozoon cun...
2495822    2 IIIGIDEAGRGPVLGPMVVCAFAIEKEREee--lKKLGVKDSKELTKNKRAYLKKLLEnL-----GYvEKRILEAEEIn- 73  Methanocaldococcus ...
20093626   3 GVMGIDEAGRGPVFGPMVVAGVLAPKRELg------LGARDSKELTRSARRRLIRALMsD-----ERlRVDLRIVWPW-- 69  Methanopyrus kandle...
1723422   64 YRLGVDEAGRGPVLGPMVYAVAYCPVDFDl---tN-YGFADSKTLASLKREELLKLICnKsnelgKNvGWSTMSISAR-- 137 fission yeast
15899137   1 MRVGIDEAGRGALIGPMIVAGVVISDTKLkf--lKGIGVKDSKQLTRERREKLFDIVAnT-----VEaFTVVKVFPYE-- 71  Sulfolobus solfatar...
11387092   6 RQCGIDEAGRGPVIGPMVISLVCCDLSFL-----KEIRVKDSKALTRKRRSELFEKIMgR-----CS-VRYRILHPKD-- 72  Thermoplasma acidop...
15790853   2 ARFGVDEAGKGPVLGSMFAAAVAGDPAAVp------DGVADSKRLSADRRAELDDRVR-------ASmRVGVAEVPVD-- 66  Halobacterium sp. N...
1730743   34 IIMGIDEAGRGPVLGPMVYAVAYSTQKYQdetiiPNYEFDDSKKLTDPIRRMLFSKIYqD-----NEeLTQIGYATTCit 108 baker's yeast
1I39_A    89 ----LD-----------ERMAAKTINEILKECYAEIILRLk----pEIAYVDSPDvip-erLSRELEEItGlr------- 141 Archaeoglobus fulgidus
7388078   74 ----EId----------GENINILVTKAVEEIVSRIVSYLgv--hpSLVVVDKYGdv--qgLRLALTRLgIepr------ 129 Aeropyrum pernix
19173027  87 temmQVr----------SVSLNEVSIGSVLRILDEVQSKCrr---vDTIYVDALGdc--rkYKERLEKDyPyr------- 144 Encephalitozoon cun...
2495822   74 ---qLMn----------SINLNDIEINAFSKVAKNLIEKLnirddeIEIYIDACStnt-kkFEDSFKDKiEdiikernln 139 Methanocaldococcus ...
20093626  70 ----EId----------EEGVAKAEFEAIRELVRRAMp--------DEVILDKPGnysperLRRELDLPeGin------- 120 Methanopyrus kandle...
1723422  138 ----ELaagml--ryrnKYNLNLQAHDTTIDLIKKVYESGin---vTEIYVDTVGpp--isYQEKLQAHfPqa------- 199 fission yeast
15899137  72 -----Id----------NYNLNDLTYDAVSKIILSLSSFNp-----EIVTVDKVGdek-pvIELINKLGyKs-------- 122 Sulfolobus solfatar...
11387092  73 ----LN-----------RMMAAESLNKIEEDEIVDLLRYAd-----DLVYIDCYDvie-erAQEIIQMRsGrq------- 124 Thermoplasma acidop...
15790853  67 ----RIdd--------pETDMNTLTVAAQADALGRVVADG------MAGYVDAGDvne-qrFGRRVANRvAadv------ 121 Halobacterium sp. N...
1730743  109 --plDIsrgmskfpptrNYNLNEQAHDVTMALIDGVIKQNvk---lSHVYVDTVGpp--asYQKKLEQRfPgv------- 174 baker's yeast
1I39_A   142 --vVAEHKADEKYPLVAAASIIAKVEREREIERLKEK--FGDFGSGYASDPRTREVLKEWIASGri--psCVRMRWKTVS 215 Archaeoglobus fulgidus
7388078  130 -siLVEEKADSRYPVVSAASIVAKVVRDARLQVLRRMy--gVRGSGYPSDPETREWVREVFARGea--prVIRYTWSTVR 204 Aeropyrum pernix
19173027 145 --fVVEERADSKFQVVSGASIVAKVQRDMLISEFGED-----LGSGYPSDPETIRWLRKNINVVfgf-ppGVRYSWATVK 216 Encephalitozoon cun...
2495822  140 ikiIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIy--GDIGSGYPSDPKTIKFLEDYFKKHkkl-pdIARTHWKTCK 216 Methanocaldococcus ...
20093626 121 --lIAEERADAKYEVVSAASIVAKTYRDWIVRLLELEy--gEVGSGYPSDPRTVDRLRRELRRGgel-lkYFRRSWETYK 195 Methanopyrus kandle...
1723422  200 -kvTVTKKADSLFPIVSLASICAKVTRDIQLECARESirtENWGSGYSSDARTTEWLKVNVDKIfgwkgdIVRYSWKTAK 278 fission yeast
15899137 123 ---NVVHKADVLFVEASAASIIAKVIRDNYIDELKQVy--gDFGSGYPADPRTIKWLKSFYEKNpnp-ppIIRRSWKILR 196 Sulfolobus solfatar...
11387092 125 --vVCKHKADAIFPAVSAASIVSKVIRDAEIDRLHDR--FGDFGSGYPSDPRTIDFLKKYLKENqdp-seIVRIHWSTVQ 199 Thermoplasma acidop...
15790853 122 -avTAEHGADDEYDLVAAASIVAKVARDAHVDALAAAf-dADIGSGYPSDSTTREFLAAYVREHgel-peCARASWQTSR 198 Halobacterium sp. N...
1730743  175 -kfTVAKKADSLYCMVSVASVVAKVTRDILVESLKRDpdE-ILGSGYPSDPKTVAWLKRNQTSLmgwpanMVRFSWQTCQ 252 baker's yeast
1I39_A   216 ------NLRQKTLD 223 Archaeoglobus fulgidus
7388078  205 klggpwRSKKAGRN 218 Aeropyrum pernix
19173027 217 kmlgerKSRPLKGA 230 Encephalitozoon cuniculi
2495822  217 rildksKQTKLIIE 230 Methanocaldococcus jannaschii
20093626 196 rvesevKQRKLEDF 209 Methanopyrus kandleri AV19
1723422  279 dllelpSKSQSSIE 292 fission yeast
15899137 197 staplyYISKEGRR 210 Sulfolobus solfataricus
11387092 200 rll-hsEKNQKKLF 212 Thermoplasma acidophilum
15790853 199 dalgaaEQSALDEF 212 Halobacterium sp. NRC-1
1730743  253 tllddaSKNSIPIK 266 baker's yeast
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